Evidence map›Paper›PMID 36771643›Full record

ArticlePlants (Basel, Switzerland)2023

Genetic Characterization of the Partial Disease Resistance of Rice to Bacterial Panicle Blight and Sheath Blight by Combined QTL Linkage and QTL-seq Analyses.

John Christian Ontoy, Bishnu Shrestha, Hari Sharan Karki, Inderjit Barphagha, Brijesh Angira, Adam Famoso, Jong Hyun Ham

Abstract read
In one paragraph

Article in Plants (Basel, Switzerland), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

John Christian OntoyDepartment of Plant Pathology and Crop Physiology, LSU AgCenter, Baton Rouge, LA 70803, USA.
Bishnu ShresthaDepartment of Plant Pathology and Crop Physiology, LSU AgCenter, Baton Rouge, LA 70803, USA.
Hari Sharan KarkiDepartment of Plant Pathology and Crop Physiology, LSU AgCenter, Baton Rouge, LA 70803, USA.
Inderjit BarphaghaDepartment of Plant Pathology and Crop Physiology, LSU AgCenter, Baton Rouge, LA 70803, USA.
Brijesh AngiraH. Rouse Caffey Rice Research Station, LSU AgCenter, Rayne, LA 70578, USA..
Adam FamosoH. Rouse Caffey Rice Research Station, LSU AgCenter, Rayne, LA 70578, USA..
Jong Hyun HamDepartment of Plant Pathology and Crop Physiology, LSU AgCenter, Baton Rouge, LA 70803, USA.ORCID 0000-0001-8924-0091

Funding

Louisiana Rice Research Board GR-00006499National Institute of Food and Agriculture 2010-85117-20559National Institute of Food and Agriculture LAB94386
6 · The paper itself

Abstract

Bacterial panicle blight (BPB) and sheath blight (SB) are major diseases of rice and few cultivars have shown a high level of resistance to these diseases. A recombinant inbred line (RIL) population developed from the U.S. cultivars Jupiter (moderately resistant) and Trenasse (susceptible) was investigated to identify loci associated with the partial disease resistance to BPB and SB. Disease phenotypes in BPB and SB, as well as the days-to-heading (DTH) trait, were evaluated in the field. DTH was correlated to BPB and SB diseases, while BPB was positively correlated to SB in the field trials with this RIL population. Genotyping was performed using Kompetitive Allele Specific PCR (KASP) assays and whole-genome sequence (WGS) analyses. Quantitative trait locus (QTL) mapping and bulk segregant analysis using a set of WGS data (QTL-seq) detected a major QTL on the upper arm of chromosome 3 for BPB, SB, and DTH traits within the 1.0-1.9 Mb position. Additional QTLs associated with BPB and SB were also identified from other chromosomes by the QTL-seq analysis. The QTLs identified in this study contain at least nine candidate genes that are predicted to have biological functions in defense or flowering. These findings provide an insight into the complex nature of the quantitative resistance to BPB and SB, which may also be closely linked to the flowering trait.

Indexed as

Burkholderia glumaehost resistancelinkage analysisOryza sativaQTLQTL-seqRhizoctonia solaniRILs

Identifiers

PMID36771643
PMCPMC9920235

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.