Evidence map›Paper›PMID 36770811›Full record

ArticleMolecules (Basel, Switzerland)2023

Computational and Experimental Evidence for Templated Macrocyclization: The Role of a Hydrogen Bond Network in the Quantitative Dimerization of 24-Atom Macrocycles.

Alexander J Menke, Nicholas C Henderson, Lola C Kouretas, Anne N Estenson, Benjamin G Janesko, Eric E Simanek

Abstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
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  7. Article
  8. Controlling Swing Rates in Macrocyclic Molecular Mortise Hinges.Chemistry (Weinheim an der Bergstrasse, Germany) · 2023
    Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Alexander J MenkeDepartment of Chemistry & Biochemistry, Texas Christian University, Fort Worth, TX 76109, USA.ORCID 0000-0001-9573-7045
Nicholas C HendersonDepartment of Chemistry & Biochemistry, Texas Christian University, Fort Worth, TX 76109, USA.
Lola C KouretasDepartment of Chemistry & Biochemistry, Texas Christian University, Fort Worth, TX 76109, USA.
Anne N EstensonDepartment of Chemistry & Biochemistry, Texas Christian University, Fort Worth, TX 76109, USA.
Benjamin G JaneskoDepartment of Chemistry & Biochemistry, Texas Christian University, Fort Worth, TX 76109, USA.
Eric E SimanekDepartment of Chemistry & Biochemistry, Texas Christian University, Fort Worth, TX 76109, USA.ORCID 0000-0002-3195-4523

Funding

Disrupting Protein-Protein Interactions with Self-Assembling MacrocyclesR15GM135900 · NIGMS · TEXAS CHRISTIAN UNIVERSITY · PI SIMANEK, ERIC E, STEWART, MIKAELA · 2019 to 2023
$736k
NIGMS NIH HHS R15 GM135900NIH HHS R15GM135900
6 · The paper itself

Abstract

In the absence of preorganization, macrocyclization reactions are often plagued by oligomeric and polymeric side products. Here, a network of hydrogen bonds was identified as the basis for quantitative yields of macrocycles derived from the dimerization of monomers. Oligomers and polymers were not observed. Macrocyclization, the result of the formation of two hydrazones, was hypothesized to proceed in two steps. After condensation to yield the monohydrazone, a network of hydrogen bonds formed to preorganize the terminal acetal and hydrazine groups for cyclization. Experimental evidence for preorganization derived from macrocycles and acyclic models. Solution NMR spectroscopy and single-crystal X-ray diffraction revealed that the macrocycles isolated from the cyclization reaction were protonated twice. These protons contributed to an intramolecular network of hydrogen bonds that engaged distant carbonyl groups to realize a long-range order. DFT calculations showed that this network of hydrogen bonds contributed 8.7 kcal/mol to stability. Acyclic models recapitulated this network in solution. Condensation of an acetal and a triazinyl hydrazine, which adopted a number of conformational isomers, yielded a hydrazone that adopted a favored rotamer conformation in solution. The critical hydrogen-bonded proton was also evident. DFT calculations of acyclic models showed that the rotamers were isoenergetic when deprotonated. Upon protonation, however, energies diverged with one low-energy rotamer adopting the conformation observed in the macrocycle. This conformation anchored the network of hydrogen bonds of the intermediate. Computation revealed that the hydrogen-bonded network in the acyclic intermediate contributed up to 14 kcal/mol of stability and preorganized the acetal and hydrazine for cyclization.

Indexed as

computationhydrazonehydrogen bondingmacrocyclepreorganizationtriazine

Identifiers

PMID36770811
PMCPMC9921993

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.