Evidence map›Paper›PMID 36769314›Full record

ArticleInternational journal of molecular sciences2023

Quantum Mechanical Study of Oxygen Ligands Protonation for the Stable States of the Laccase Active Site.

Sergei Gavryushov, Nikolay N Kuzmich, Konstantin M Polyakov

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Laccase Production Optimization from RecombinantMolecules (Basel, Switzerland) · 2024
    Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Sergei GavryushovEngelhardt Institute of Molecular Biology, Russian Academy of Sciences, Vavilova Str. 32, 119334 Moscow, Russia.
Nikolay N KuzmichInstitute for Translational Medicine and Biotechnology, Sechenov First Moscow State Medical University, 2-4 Bolshaya Pirogovskaya Str., 119991 Moscow, Russia.ORCID 0000-0002-0305-5619
Konstantin M PolyakovEngelhardt Institute of Molecular Biology, Russian Academy of Sciences, Vavilova Str. 32, 119334 Moscow, Russia.

Funding

Russian Foundation for Basic Research 20-04-00683
6 · The paper itself

Abstract

Laccases are enzymes catalyzing the oxidation of a wide range of organic and inorganic substrates accompanied by molecular oxygen reduction to water. Recently, oxygen reduction by laccases has been studied by single-crystal serial X-ray crystallography with increasing absorption doses at subatomic resolution. There were two determined structures corresponding to the reduced and oxidized stable states of the laccase active site. However, the protonation of the oxygen ligands involved cannot be determined even at subatomic resolution. In the present work, the protonation of oxygen ligands in the active site of laccase for the two stable states determined in the X-ray study was explored using quantum mechanical and continuum-electrostatics calculations. This is important for understanding the reaction of the oxygen reduction mechanism in laccases. The high precision of X-ray data at subatomic resolutions allowed us to optimize the quantum mechanical calculations.

Indexed as

LaccaseOxygenCatalytic DomainCrystallography, X-RayOxidation-ReductionProtein ConformationLaccaseOxygenDFT calculationsenzymatic oxygen reductionlaccaseoxygen ligands protonationreaction mechanism

Identifiers

PMID36769314
PMCPMC9917769

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.