Evidence map›Paper›PMID 36769083›Full record

ArticleInternational journal of molecular sciences2023

Machine Learning Approximations to Predict Epigenetic Age Acceleration in Stroke Patients.

Isabel Fernández-Pérez, Joan Jiménez-Balado, Uxue Lazcano, Eva Giralt-Steinhauer, Lucía Rey Álvarez, Elisa Cuadrado-Godia, Ana Rodríguez-Campello, Adrià Macias-Gómez, Antoni Suárez-Pérez, Anna Revert-Barberá and 5 more

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Isabel Fernández-PérezNeurovascular Research Group, Department of Neurology, IMIM-Hospital del Mar (Institut Hospital del Mar d'Investigacions Mèdiques), 08003 Barcelona, Spain.ORCID 0000-0002-9949-1393
Joan Jiménez-BaladoNeurovascular Research Group, Department of Neurology, IMIM-Hospital del Mar (Institut Hospital del Mar d'Investigacions Mèdiques), 08003 Barcelona, Spain.
Uxue LazcanoUnidad de Investigación AP-OSIs Guipúzcoa, 20014 Donostia, Spain.ORCID 0000-0003-3948-3372
Eva Giralt-SteinhauerNeurovascular Research Group, Department of Neurology, IMIM-Hospital del Mar (Institut Hospital del Mar d'Investigacions Mèdiques), 08003 Barcelona, Spain.
Lucía Rey ÁlvarezNeurovascular Research Group, Department of Neurology, IMIM-Hospital del Mar (Institut Hospital del Mar d'Investigacions Mèdiques), 08003 Barcelona, Spain.
Elisa Cuadrado-GodiaNeurovascular Research Group, Department of Neurology, IMIM-Hospital del Mar (Institut Hospital del Mar d'Investigacions Mèdiques), 08003 Barcelona, Spain.ORCID 0000-0002-9147-875X
Ana Rodríguez-CampelloNeurovascular Research Group, Department of Neurology, IMIM-Hospital del Mar (Institut Hospital del Mar d'Investigacions Mèdiques), 08003 Barcelona, Spain.ORCID 0000-0001-8621-1420
Adrià Macias-GómezNeurovascular Research Group, Department of Neurology, IMIM-Hospital del Mar (Institut Hospital del Mar d'Investigacions Mèdiques), 08003 Barcelona, Spain.ORCID 0000-0003-0926-681X
Antoni Suárez-PérezNeurovascular Research Group, Department of Neurology, IMIM-Hospital del Mar (Institut Hospital del Mar d'Investigacions Mèdiques), 08003 Barcelona, Spain.
Anna Revert-BarberáNeurovascular Research Group, Department of Neurology, IMIM-Hospital del Mar (Institut Hospital del Mar d'Investigacions Mèdiques), 08003 Barcelona, Spain.
Isabel Estragués-GázquezNeurovascular Research Group, Department of Neurology, IMIM-Hospital del Mar (Institut Hospital del Mar d'Investigacions Mèdiques), 08003 Barcelona, Spain.
Carolina Soriano-TarragaDepartment of Psychiatry, NeuroGenomics and Informatics, Washington University School of Medicine, St. Louis, MO 63110, USA.
Jaume RoquerNeurovascular Research Group, Department of Neurology, IMIM-Hospital del Mar (Institut Hospital del Mar d'Investigacions Mèdiques), 08003 Barcelona, Spain.
Angel OisNeurovascular Research Group, Department of Neurology, IMIM-Hospital del Mar (Institut Hospital del Mar d'Investigacions Mèdiques), 08003 Barcelona, Spain.ORCID 0000-0002-1375-5950
Jordi Jiménez-CondeNeurovascular Research Group, Department of Neurology, IMIM-Hospital del Mar (Institut Hospital del Mar d'Investigacions Mèdiques), 08003 Barcelona, Spain.ORCID 0000-0002-2623-6199

Funding

Fondos FEDER/EDRF Spanish stroke research network INVICTUS+ RD16/0019/0002Fundación La Caixa JJ086116Instituto de Salud Carlos III PI051737Instituto de Salud Carlos III PI12/01238Instituto de Salud Carlos III PI15/00451Instituto de Salud Carlos III PI18/00022Instituto de Salud Carlos III PI21/00593RICORS-ICTUS RD21/0006/0021
6 · The paper itself

Abstract

Age acceleration (Age-A) is a useful tool that is able to predict a broad range of health outcomes. It is necessary to determine DNA methylation levels to estimate it, and it is known that Age-A is influenced by environmental, lifestyle, and vascular risk factors (VRF). The aim of this study is to estimate the contribution of these easily measurable factors to Age-A in patients with cerebrovascular disease (CVD), using different machine learning (ML) approximations, and try to find a more accessible model able to predict Age-A. We studied a CVD cohort of 952 patients with information about VRF, lifestyle habits, and target organ damage. We estimated Age-A using Hannum's epigenetic clock, and trained six different models to predict Age-A: a conventional linear regression model, four ML models (elastic net regression (EN), K-Nearest neighbors, random forest, and support vector machine models), and one deep learning approximation (multilayer perceptron (MLP) model). The best-performing models were EN and MLP; although, the predictive capability was modest (R

Indexed as

Cerebrovascular DisordersStrokeEpigenesis, GeneticHumansMachine LearningNeural Networks, Computeragingepigenetic clockmachine learningstrokevascular risk factors

Identifiers

PMID36769083
PMCPMC9917369

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.