Evidence map›Paper›PMID 36769000›Full record

ReviewInternational journal of molecular sciences2023

Spatial-Temporal Genome Regulation in Stress-Response and Cell-Fate Change.

Jekaterina Erenpreisa, Alessandro Giuliani, Kenichi Yoshikawa, Martin Falk, Georg Hildenbrand, Kristine Salmina, Talivaldis Freivalds, Ninel Vainshelbaum, Jonas Weidner, Aaron Sievers and 2 more

Abstract readReviewConference Proceedings
In one paragraph

Review in International journal of molecular sciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Jekaterina ErenpreisaLatvian Biomedicine Research and Study Centre, LV1067 Riga, Latvia.ORCID 0000-0002-2870-7775
Alessandro GiulianiIstituto Superiore di Sanita Environment and Health Department, 00161 Roma, Italy.ORCID 0000-0002-4640-804X
Kenichi YoshikawaFaculty of Life and Medical Sciences, Doshisha University, Kyoto 610-0394, Japan.ORCID 0000-0002-2751-7136
Martin FalkInstitute of Biophysics, The Czech Academy of Sciences, 612 65 Brno, Czech Republic.ORCID 0000-0002-9229-0468
Georg HildenbrandKirchhoff Institute for Physics, Heidelberg University, 69120 Heidelberg, Germany.ORCID 0000-0003-1992-6025
Kristine SalminaLatvian Biomedicine Research and Study Centre, LV1067 Riga, Latvia.
Talivaldis FreivaldsInstitute of Cardiology and Regenerative Medicine, University of Latvia, LV1004 Riga, Latvia.
Ninel VainshelbaumLatvian Biomedicine Research and Study Centre, LV1067 Riga, Latvia.
Jonas WeidnerKirchhoff Institute for Physics, Heidelberg University, 69120 Heidelberg, Germany.
Aaron SieversKirchhoff Institute for Physics, Heidelberg University, 69120 Heidelberg, Germany.
Götz PilarczykKirchhoff Institute for Physics, Heidelberg University, 69120 Heidelberg, Germany.
Michael HausmannKirchhoff Institute for Physics, Heidelberg University, 69120 Heidelberg, Germany.ORCID 0000-0001-9430-1987

Funding

Baltic-German University Liaison Office, German Academic Exchange Service (DAAD), Foreign Office of the Federal Republic Germany 181002
6 · The paper itself

Abstract

Complex functioning of the genome in the cell nucleus is controlled at different levels: (a) the DNA base sequence containing all relevant inherited information; (b) epigenetic pathways consisting of protein interactions and feedback loops; (c) the genome architecture and organization activating or suppressing genetic interactions between different parts of the genome. Most research so far has shed light on the puzzle pieces at these levels. This article, however, attempts an integrative approach to genome expression regulation incorporating these different layers. Under environmental stress or during cell development, differentiation towards specialized cell types, or to dysfunctional tumor, the cell nucleus seems to react as a whole through coordinated changes at all levels of control. This implies the need for a framework in which biological, chemical, and physical manifestations can serve as a basis for a coherent theory of gene self-organization. An international symposium held at the Biomedical Research and Study Center in Riga, Latvia, on 25 July 2022 addressed novel aspects of the abovementioned topic. The present article reviews the most recent results and conclusions of the state-of-the-art research in this multidisciplinary field of science, which were delivered and discussed by scholars at the Riga symposium.

Indexed as

Cell NucleusGenomeCell Differentiationdatabase pattern analysisdynamic genome organizationepigenetic interactionsfluorescence microscopygene activity oscillationsheterochromatin and self-organizationnucleotide k-mersorganizational and functional networkstopological genome analysistransposon-effected regulation

Identifiers

PMID36769000
PMCPMC9917235

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.