Evidence map›Paper›PMID 36768502›Full record

ArticleInternational journal of molecular sciences2023

Transcriptional Analysis of the Differences between ToLCNDV-India and ToLCNDV-ES Leading to Contrary Symptom Development in Cucumber.

Thuy T B Vo, Won Kyong Cho, Yeonhwa Jo, Aamir Lal, Bupi Nattanong, Muhammad Amir Qureshi, Marjia Tabssum, Elisa Troiano, Giuseppe Parrella, Eui-Joon Kil and 2 more

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Thuy T B VoDepartment of Integrative Biotechnology, Sungkyunkwan University, Suwon 16419, Republic of Korea.ORCID 0000-0002-7814-8721
Won Kyong ChoCollege of Biotechnology and Bioengineering, Sungkyunkwan University, Suwon 16419, Republic of Korea.ORCID 0000-0002-8416-5173
Yeonhwa JoCollege of Biotechnology and Bioengineering, Sungkyunkwan University, Suwon 16419, Republic of Korea.
Aamir LalDepartment of Integrative Biotechnology, Sungkyunkwan University, Suwon 16419, Republic of Korea.ORCID 0000-0003-3810-8554
Bupi NattanongDepartment of Integrative Biotechnology, Sungkyunkwan University, Suwon 16419, Republic of Korea.
Muhammad Amir QureshiDepartment of Integrative Biotechnology, Sungkyunkwan University, Suwon 16419, Republic of Korea.
Marjia TabssumDepartment of Integrative Biotechnology, Sungkyunkwan University, Suwon 16419, Republic of Korea.
Elisa TroianoInstitute for Sustainable Plant Protection of the National Research Council (IPSP-CNR), 80055 Portici, Italy.
Giuseppe ParrellaInstitute for Sustainable Plant Protection of the National Research Council (IPSP-CNR), 80055 Portici, Italy.ORCID 0000-0002-0412-4014
Eui-Joon KilDepartment of Plant Medicals, Andong National University, Andong 36729, Republic of Korea.ORCID 0000-0002-7256-3879
Taek-Kyun LeeRisk Assessment Research Center, Korea Institute of Ocean Science & Technology, Geoje 53201, Republic of Korea.ORCID 0000-0001-6090-507X
Sukchan LeeDepartment of Integrative Biotechnology, Sungkyunkwan University, Suwon 16419, Republic of Korea.

Funding

the Ministry of Oceans and Fisheries, Korea 202104662
6 · The paper itself

Abstract

Tomato leaf curl New Delhi virus-ES (ToLCNDV-ES), a high threat to cucurbits in the Mediterranean Basin, is listed as a different strain from the Asian ToLCNDV isolates. In this study, the infectivity of two clones previously isolated from Italy and Pakistan were compared in cucumbers, which resulted in the opposite symptom appearance. The swapping subgenome was processed; however, the mechanisms related to the disease phenotype remain unclear. To identify the disease-associated genes that could contribute to symptom development under the two ToLCNDV infections, the transcriptomes of ToLCNDV-infected and mock-inoculated cucumber plants were compared 21 days postinoculation. The number of differentially expressed genes in ToLCNDV-India-infected plants was 10 times higher than in ToLCNDV-ES-infected samples. The gene ontology (GO) and pathway enrichment were analyzed using the Cucurbits Genomics Database. The flavonoid pathway-related genes were upregulated in ToLCNDV-ES, but some were downregulated in ToLCNDV-India infection, suggesting their role in resistance to the two ToLCNDV infections. The relative expression levels of the selected candidate genes were validated by qRT-PCR under two ToLCNDV-infected conditions. Our results reveal the different infectivity of the two ToLCNDVs in cucumber and also provide primary information based on RNA-seq for further analysis related to different ToLCNDV infections.

Indexed as

BegomovirusCucumis sativusIndiaItalyPakistanPlant DiseasesPolymerase Chain Reactioncucumberinfectivity comparisonRNA-seqsymptom developmenttomato leaf curl New Delhi virus

Identifiers

PMID36768502
PMCPMC9916722

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.