Evidence map›Paper›PMID 36765523›Full record

ArticleCancers2023

Standardising Breast Radiotherapy Structure Naming Conventions: A Machine Learning Approach.

Ali Haidar, Matthew Field, Vikneswary Batumalai, Kirrily Cloak, Daniel Al Mouiee, Phillip Chlap, Xiaoshui Huang, Vicky Chin, Farhannah Aly, Martin Carolan and 4 more

Abstract read
In one paragraph

Article in Cancers, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Ali HaidarIngham Institute for Applied Medical Research, Liverpool, NSW 2170, Australia.ORCID 0000-0001-5092-949X
Matthew FieldIngham Institute for Applied Medical Research, Liverpool, NSW 2170, Australia.
Vikneswary BatumalaiSouth Western Sydney Clinical School, University of New South Wales, Liverpool, NSW 2170, Australia.ORCID 0000-0003-2021-2599
Kirrily CloakIngham Institute for Applied Medical Research, Liverpool, NSW 2170, Australia.
Daniel Al MouieeIngham Institute for Applied Medical Research, Liverpool, NSW 2170, Australia.ORCID 0000-0002-8766-7451
Phillip ChlapIngham Institute for Applied Medical Research, Liverpool, NSW 2170, Australia.
Xiaoshui HuangIngham Institute for Applied Medical Research, Liverpool, NSW 2170, Australia.
Vicky ChinIngham Institute for Applied Medical Research, Liverpool, NSW 2170, Australia.
Farhannah AlyIngham Institute for Applied Medical Research, Liverpool, NSW 2170, Australia.ORCID 0000-0003-4674-1480
Martin CarolanIllawarra Cancer Care Center, Wollongong, NSW 2522, Australia.
Jonathan SykesUniversity of Sydney, Camperdown, NSW 2006, Australia.
Shalini K VinodIngham Institute for Applied Medical Research, Liverpool, NSW 2170, Australia.
Geoffrey P DelaneyIngham Institute for Applied Medical Research, Liverpool, NSW 2170, Australia.
Lois HollowayIngham Institute for Applied Medical Research, Liverpool, NSW 2170, Australia.

Funding

Illawarra and Shoalhaven Local Health District RG180909Ingham Institute Data and Cancer Research Grant 2019 Detecting and Fixing Variations in Cancer Patients Medical RecordsNepean Blue Mountains Local Health District RG180906South Western Sydney Local Health District (SWSLHD) RG170165Western Sydney Local Health District RG180908
6 · The paper itself

Abstract

In progressing the use of big data in health systems, standardised nomenclature is required to enable data pooling and analyses. In many radiotherapy planning systems and their data archives, target volumes (TV) and organ-at-risk (OAR) structure nomenclature has not been standardised. Machine learning (ML) has been utilised to standardise volumes nomenclature in retrospective datasets. However, only subsets of the structures have been targeted. Within this paper, we proposed a new approach for standardising all the structures nomenclature by using multi-modal artificial neural networks. A cohort consisting of 1613 breast cancer patients treated with radiotherapy was identified from Liverpool & Macarthur Cancer Therapy Centres, NSW, Australia. Four types of volume characteristics were generated to represent each target and OAR volume: textual features, geometric features, dosimetry features, and imaging data. Five datasets were created from the original cohort, the first four represented different subsets of volumes and the last one represented the whole list of volumes. For each dataset, 15 sets of combinations of features were generated to investigate the effect of using different characteristics on the standardisation performance. The best model reported 99.416% classification accuracy over the hold-out sample when used to standardise all the nomenclatures in a breast cancer radiotherapy plan into 21 classes. Our results showed that ML based automation methods can be used for standardising naming conventions in a radiotherapy plan taking into consideration the inclusion of multiple modalities to better represent each volume.

Indexed as

artificial neural networkscancerdata standardisationmultimodal learning

Identifiers

PMID36765523
PMCPMC9913464

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.