Evidence map›Paper›PMID 36764303›Full record

ArticleMolecular cell2023

Targeted pseudouridylation: An approach for suppressing nonsense mutations in disease genes.

Hironori Adachi, Yi Pan, Xueyang He, Jonathan L Chen, Bart Klein, Gerard Platenburg, Pedro Morais, Paul Boutz, Yi-Tao Yu

Open access · greenAbstract read
In one paragraph

Article in Molecular cell, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
15.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 67 citations in OpenAlex.

  1. RNAViruses · 2026
    Review
  2. Review
  3. Pseudouridines in translation.Nature chemical biology · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Review
  16. Functions and therapeutic applications of pseudouridylation.Nature reviews. Molecular cell biology · 2025
    Review
  17. Article
  18. Review
  19. Site-Selective Modification and Labeling of Native RNA.Chemistry (Weinheim an der Bergstrasse, Germany) · 2025
    Review
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Hironori AdachiDepartment of Biochemistry and Biophysics, Center for RNA Biology, University of Rochester Medical Center, Rochester, NY, USA.
Yi PanDepartment of Biochemistry and Biophysics, Center for RNA Biology, University of Rochester Medical Center, Rochester, NY, USA.
Xueyang HeDepartment of Biochemistry and Biophysics, Center for RNA Biology, University of Rochester Medical Center, Rochester, NY, USA.
Jonathan L ChenDepartment of Biochemistry and Biophysics, Center for RNA Biology, University of Rochester Medical Center, Rochester, NY, USA.
Bart KleinProQR Therapeutics, Leiden, the Netherlands.
Gerard PlatenburgProQR Therapeutics, Leiden, the Netherlands.
Pedro MoraisProQR Therapeutics, Leiden, the Netherlands. Electronic address: pmorais@proqr.com.
Paul BoutzDepartment of Biochemistry and Biophysics, Center for RNA Biology, University of Rochester Medical Center, Rochester, NY, USA; Center for Biomedical Informatics and Wilmot Cancer Institute, University of Rochester Medical Center, Rochester, NY, USA. Electronic address: paul_boutz@urmc.rochester.edu.
Yi-Tao YuDepartment of Biochemistry and Biophysics, Center for RNA Biology, University of Rochester Medical Center, Rochester, NY, USA. Electronic address: yitao_yu@urmc.rochester.edu.
University of Rochester Medical Center · USProQR Therapeutics (Netherlands) · NL

Funding

Genomics-based approaches to understanding mechanistic alterations of spliceosome function in disease statesR01GM141544 · NIGMS · UNIVERSITY OF ROCHESTER · PI BOUTZ, PAUL LAWRENCE · 2021 to 2025
$1.6M
Pseudouridine-mediated branch site recognition/selection during pre-mRNA splicingR01GM138387 · NIGMS · UNIVERSITY OF ROCHESTER · PI YU, YI-TAO · 2020 to 2023
$1.4M
Suppression of disease causingnonsense mutations by targeted mRNA pseudouridylationR21CA241111 · NCI · UNIVERSITY OF ROCHESTER · PI YU, YI-TAO · 2019 to 2020
$368k
NCI NIH HHS R21 CA241111NIGMS NIH HHS R01 GM138387NIGMS NIH HHS R01 GM141544
6 · The paper itself

Abstract

Nonsense mutations create premature termination codons (PTCs), activating the nonsense-mediated mRNA decay (NMD) pathway to degrade most PTC-containing mRNAs. The undegraded mRNA is translated, but translation terminates at the PTC, leading to no production of the full-length protein. This work presents targeted PTC pseudouridylation, an approach for nonsense suppression in human cells. Specifically, an artificial box H/ACA guide RNA designed to target the mRNA PTC can suppress both NMD and premature translation termination in various sequence contexts. Targeted pseudouridylation exhibits a level of suppression comparable with that of aminoglycoside antibiotic treatments. When targeted pseudouridylation is combined with antibiotic treatment, a much higher level of suppression is observed. Transfection of a disease model cell line (carrying a chromosomal PTC) with a designer guide RNA gene targeting the PTC also leads to nonsense suppression. Thus, targeted pseudouridylation is an RNA-directed gene-specific approach that suppresses NMD and concurrently promotes PTC readthrough.

Indexed as

Codon, NonsenseProtein BiosynthesisHumansNonsense Mediated mRNA DecayRNA, MessengerCodon, NonsenseRNA, Messengerbox H/ACA RNAnonsense-mediated mRNA decaynonsense mutationsnonsense suppressionpremature termination codonpseudouridinePTC read-throughRNA modificationtargeted pseudouridylation

Identifiers

PMID36764303
PMCPMC9975048
OpenAlexW4319727494

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.