ArticleThe Journal of heredity2023
A highly contiguous genome assembly for the California quail (Callipepla californica).
Article in The Journal of heredity, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
6 citing papers in PubMed.
- A highly contiguous genome assembly for the wrentit (Chamaea fasciata), the sole representative of the babbler radiation in the Americas.The Journal of heredity · 2026Article
- Hybrid assembly and comparative genomics unveil insights into the evolution and biology of the red-legged partridge.Scientific reports · 2024Article
- A highly contiguous reference genome for the Steller's jay (Cyanocitta stelleri).The Journal of heredity · 2023Article
- Reference genome of the Virginia rail, Rallus limicola.The Journal of heredity · 2023Article
- Reference genome of the black rail, Laterallus jamaicensis.The Journal of heredity · 2023Article
- Off-target metagenomics: Leveraging whole genome sequencing to study the bacteriome of the liverwortApplications in plant sciencesArticle
Corrections and comments
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Authors and funding
8 authors.
Funding
Abstract
The California quail (Callipepla californica) is an iconic native bird of scrub and oak woodlands in California and the Baja Peninsula of Mexico. Here, we report a draft reference assembly for the species generated from PacBio HiFi long read and Omni-C chromatin-proximity sequencing data as part of the California Conservation Genomics Project (CCGP). Sequenced reads were assembled into 321 scaffolds totaling 1.08 Gb in length. Assembly metrics indicate a highly contiguous and complete assembly with a contig N50 of 5.5 Mb, scaffold N50 of 19.4 Mb, and BUSCO completeness score of 96.5%. Transposable elements (TEs) occupy 16.5% of the genome, more than previous Odontophoridae quail assemblies but in line with estimates of TE content for recent long-read assemblies of chicken and Peking duck. Together these metrics indicate that the present assembly is more complete than prior reference assemblies generated for Odontophoridae quail. This reference will serve as an essential resource for studies on local adaptation, phylogeography, and conservation genetics in this species of significant biological and recreational interest.
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Registered trials
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