Evidence map›Paper›PMID 36762655›Full record

ArticleDevelopment (Cambridge, England)2023

Warm temperature-triggered developmental reprogramming requires VIL1-mediated, genome-wide H3K27me3 accumulation in Arabidopsis.

Junghyun Kim, Yogendra Bordiya, Yanpeng Xi, Bo Zhao, Dong-Hwan Kim, Youngjae Pyo, Wei Zong, William A Ricci, Sibum Sung

Open access · bronzeAbstract read
In one paragraph

Article in Development (Cambridge, England), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
9.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 25 citations in OpenAlex.

  1. Review
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  10. COP1 controls light-dependent chromatin remodeling.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Junghyun KimDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, TX 78712, USA.ORCID 0000-0001-8112-4897
Yogendra BordiyaDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, TX 78712, USA.ORCID 0000-0002-6068-0736
Yanpeng XiDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, TX 78712, USA.
Bo ZhaoDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, TX 78712, USA.ORCID 0000-0002-8004-9538
Dong-Hwan KimDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, TX 78712, USA.
Youngjae PyoDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, TX 78712, USA.ORCID 0000-0002-0339-0257
Wei ZongDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, TX 78712, USA.
William A RicciDepartment of Plant Biology, University of Georgia, Athens, GA 30602, USA.ORCID 0000-0001-7944-623X
Sibum SungDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, TX 78712, USA.ORCID 0000-0003-2980-9009
The University of Texas at Austin · USUniversity of Georgia · US

Funding

Coordinated regulation of floral transition by protein and long noncoding RNA componentsR01GM100108 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI SUNG, SIBUM · 2012 to 2025
$4.0M
NIGMS NIH HHS 100108NIGMS NIH HHS R01 GM100108
6 · The paper itself

Abstract

Changes in ambient temperature immensely affect developmental programs in many species. Plants adapt to high ambient growth temperature in part by vegetative and reproductive developmental reprogramming, known as thermo-morphogenesis. Thermo-morphogenesis is accompanied by massive changes in the transcriptome upon temperature change. Here, we show that transcriptome changes induced by warm ambient temperature require VERNALIZATION INSENSITIVE 3-LIKE 1 (VIL1), a facultative component of the Polycomb repressive complex PRC2, in Arabidopsis. Warm growth temperature elicits genome-wide accumulation of H3K27me3 and VIL1 is necessary for the warm temperature-mediated accumulation of H3K27me3. Consistent with its role as a mediator of thermo-morphogenesis, loss of function of VIL1 results in hypo-responsiveness to warm ambient temperature. Our results show that VIL1 is a major chromatin regulator in responses to high ambient temperature.

Indexed as

ArabidopsisArabidopsis ProteinsGene Expression Regulation, PlantHistonesHomeodomain ProteinsPolycomb-Group ProteinsTemperatureArabidopsis ProteinsHistonesHomeodomain ProteinsPolycomb-Group ProteinsVIL1 protein, ArabidopsisClimate changeHistone H3 lysine 27 trimethylationPolycomb repressive complex 2Thermo-morphogenesisVERNALIZATION INSENSITIVE 3 LIKE 1

Identifiers

PMID36762655
PMCPMC10110417
OpenAlexW4319827492

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.