Evidence map›Paper›PMID 36761622›Full record

ArticleBiodiversity data journal2022

Research Infrastructure Contact Zones: a framework and dataset to characterise the activities of major biodiversity informatics initiatives.

Vincent Stuart Smith, Lisa French, Sarah Vincent, Matt Woodburn, Wouter Addink, Christos Arvanitidis, Olaf Bánki, Ana Casino, Francois Dusoulier, Falko Glöckler and 7 more

Abstract read
In one paragraph

Article in Biodiversity data journal, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Vincent Stuart SmithNatural History Museum, London, United Kingdom Natural History Museum London United Kingdom.ORCID https://orcid.org/0000-0001-5297-7452
Lisa FrenchNatural History Museum, London, United Kingdom Natural History Museum London United Kingdom.ORCID https://orcid.org/0000-0001-7279-8582
Sarah VincentNatural History Museum, London, United Kingdom Natural History Museum London United Kingdom.ORCID https://orcid.org/0000-0002-4012-0571
Matt WoodburnNatural History Museum, London, United Kingdom Natural History Museum London United Kingdom.ORCID https://orcid.org/0000-0001-6496-1423
Wouter AddinkNaturalis Biodiversity Center, Leiden, Netherlands Naturalis Biodiversity Center Leiden Netherlands.ORCID https://orcid.org/0000-0002-3090-1761
Christos ArvanitidisLifeWatch ERIC, Seville, Spain LifeWatch ERIC Seville Spain.
Olaf BánkiCatalogue of Life, Amsterdam, Netherlands Catalogue of Life Amsterdam Netherlands.ORCID https://orcid.org/0000-0001-6197-9951
Ana CasinoConsortium of European Taxonomic Facilities, Brussels, Belgium Consortium of European Taxonomic Facilities Brussels Belgium.
Francois DusoulierMuséum national d'histoire naturelle, Paris, France Muséum national d'histoire naturelle Paris France.ORCID https://orcid.org/0000-0001-9062-5239
Falko GlöcklerMuseum für Naturkunde Berlin, Leibniz Institute for Evolution and Biodiversity Science, Berlin, Germany Museum für Naturkunde Berlin, Leibniz Institute for Evolution and Biodiversity Science Berlin Germany.ORCID https://orcid.org/0000-0002-7127-2738
Donald HobernInternational Barcode of Life, Guelph, Canada International Barcode of Life Guelph Canada.ORCID https://orcid.org/0000-0001-6492-4016
Martin R KalfatovicSmithsonian Institution Libraries and Archives / Biodiversity Heritage Library, Washington, United States of America Smithsonian Institution Libraries and Archives / Biodiversity Heritage Library Washington United States of America.ORCID https://orcid.org/0000-0002-4563-4627
Dimitrios KoureasNaturalis Biodiversity Center, Leiden, Netherlands Naturalis Biodiversity Center Leiden Netherlands.ORCID https://orcid.org/0000-0002-4842-6487
Patricia MergenMeise Botanic Garden, Meise, Belgium Meise Botanic Garden Meise Belgium.ORCID https://orcid.org/0000-0003-2848-8231
Joe MillerGBIF, Copenhagen, Denmark GBIF Copenhagen Denmark.ORCID https://orcid.org/0000-0002-5788-9010
Leif SchulmanFinnish Environment Institute, Helsinki, Finland Finnish Environment Institute Helsinki Finland.ORCID https://orcid.org/0000-0002-1990-2173
Aino JuslénFinnish Museum of Natural History, Helsinki, Finland Finnish Museum of Natural History Helsinki Finland.ORCID https://orcid.org/0000-0001-9434-5250

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: The landscape of biodiversity data infrastructures and organisations is complex and fragmented. Many occupy specialised niches representing narrow segments of the multidimensional biodiversity informatics space, while others operate across a broad front, but differ from others by data type(s) handled, their geographic scope and the life cycle phase(s) of the data they support. In an effort to characterise the various dimensions of the biodiversity informatics landscape, we developed a framework and dataset to survey these dimensions for ten organisations (DiSSCo, GBIF, iBOL, Catalogue of Life, iNaturalist, Biodiversity Heritage Library, GeoCASe, LifeWatch, eLTER ELIXIR), relative to both their current activities and long-term strategic ambitions. New information: The survey assessed the contact between the infrastructure organisations by capturing the breadth of activities for each infrastructure across five categories (data, standards, software, hardware and policy), for nine types of data (specimens, collection descriptions, opportunistic observations, systematic observations, taxonomies, traits, geological data, molecular data and literature) and for seven phases of activity (creation, aggregation, access, annotation, interlinkage, analysis and synthesis). This generated a dataset of 6,300 verified observations, which have been scored and validated by leading members of each infrastructure organisation. The resulting data allow high-level questions about the overall biodiversity informatics landscape to be addressed, including the greatest gaps and contact between organisations.

Indexed as

alignmentbiodiversity informaticscommunitycoordinationdata visualisationmethods

Identifiers

PMID36761622
PMCPMC9848541

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.