Evidence map›Paper›PMID 36759782›Full record

ArticleBMC microbiology2023

SigB modulates expression of novel SigB regulon members via Bc1009 in non-stressed and heat-stressed cells revealing its alternative roles in Bacillus cereus.

Kah Yen Claire Yeak, Marcel Tempelaars, Jia Lun Wu, Wouter Westerveld, Alexander Reder, Stephan Michalik, Vishnu M Dhople, Uwe Völker, Jan Pané-Farré, Marjon H J Wells-Bennik and 1 more

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

  1. DecodingPlants (Basel, Switzerland) · 2026
    Review
  2. Article
  3. Sigma B regulated motility and chemotaxis inMicrobiology (Reading, England) · 2026
    Article
  4. Review
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Kah Yen Claire Yeak *NIZO, Kernhemseweg 2, PO Box 20, 6718 ZB, Ede, The Netherlands.
Marcel Tempelaars *Food Microbiology, Wageningen University and Research, PO Box 8129, 6700 EV, Wageningen, The Netherlands.
Jia Lun WuFood Microbiology, Wageningen University and Research, PO Box 8129, 6700 EV, Wageningen, The Netherlands.
Wouter WesterveldFood Microbiology, Wageningen University and Research, PO Box 8129, 6700 EV, Wageningen, The Netherlands.
Alexander RederInterfaculty Institute for Genetics and Functional Genomics, University Medicine Greifswald, Greifswald, Germany.
Stephan MichalikInterfaculty Institute for Genetics and Functional Genomics, University Medicine Greifswald, Greifswald, Germany.
Vishnu M DhopleInterfaculty Institute for Genetics and Functional Genomics, University Medicine Greifswald, Greifswald, Germany.
Uwe VölkerInterfaculty Institute for Genetics and Functional Genomics, University Medicine Greifswald, Greifswald, Germany.
Jan Pané-FarréCenter for Synthetic Microbiology (SYNMIKRO) & Department of Chemistry, Philipps-University Marburg, Karl-Von-Frisch-Strasse 14, 35043, Marburg, Germany.
Marjon H J Wells-BennikNIZO, Kernhemseweg 2, PO Box 20, 6718 ZB, Ede, The Netherlands.
Tjakko AbeeFood Microbiology, Wageningen University and Research, PO Box 8129, 6700 EV, Wageningen, The Netherlands. tjakko.abee@wur.nl.
Wageningen University & Research · NLUniversitätsmedizin Greifswald · DELoewe Center for Synthetic Microbiology · DENederlands Instituut Voor Zuivel Oonderzoek · NL

Funding

H2020 Marie Skłodowska-Curie Actions 721456
6 · The paper itself

Abstract

backgroundThe Bacillus cereus Sigma B (SigB) dependent general stress response is activated via the two-component RsbKY system, which involves a phosphate transfer from RsbK to RsbY. It has been hypothesized that the Hpr-like phosphocarrier protein (Bc1009) encoded by bc1009 in the SigB gene cluster may play a role in this transfer, thereby acting as a regulator of SigB activation. Alternatively, Bc1009 may be involved in the activation of a subset of SigB regulon members.

resultsWe first investigated the potential role of bc1009 to act as a SigB regulator but ruled out this possibility as the deletion of bc1009 did not affect the expression of sigB and other SigB gene cluster members. The SigB-dependent functions of Bc1009 were further examined in B. cereus ATCC14579 via comparative proteome profiling (backed up by transcriptomics) of wt, Δbc1009 and ΔsigB deletion mutants under heat stress at 42 °C. This revealed 284 proteins displaying SigB-dependent alterations in protein expression levels in heat-stressed cells, including a subgroup of 138 proteins for which alterations were also Bc1009-dependent. Next to proteins with roles in stress defense, newly identified SigB and Bc1009-dependent proteins have roles in cell motility, signal transduction, transcription, cell wall biogenesis, and amino acid transport and metabolism. Analysis of lethal stress survival at 50 °C after pre-adaptation at 42 °C showed intermediate survival efficacy of Δbc1009 cells, highest survival of wt, and lowest survival of ΔsigB cells, respectively. Additional comparative proteome analysis of non-stressed wt and mutant cells at 30 °C revealed 96 proteins with SigB and Bc1009-dependent differences in levels: 51 were also identified under heat stress, and 45 showed significant differential expression at 30 °C. This includes proteins with roles in carbohydrate/ion transport and metabolism. Overlapping functions at 30 °C and 42 °C included proteins involved in motility, and ΔsigB and Δbc1009 cells showed reduced motility compared to wt cells in swimming assays at both temperatures.

conclusionOur results extend the B. cereus SigB regulon to > 300 members, with a novel role of SigB-dependent Bc1009 in the activation of a subregulon of  > 180 members, conceivably via interactions with other transcriptional regulatory networks.

Indexed as

Bacillus cereusProteomeBacterial ProteinsGene Expression Regulation, BacterialHeat-Shock ResponseRegulonSigma FactorBacterial ProteinsProteomeSigma FactorAdaptive general stress responseAmino acid metabolismsMetabolic crosstalkMotilityPhosphocarrier proteinSigB baseline functionSigB subregulonSporulationVirulence

Identifiers

PMID36759782
PMCPMC9912610
OpenAlexW4319827503

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.