Evidence map›Paper›PMID 36759759›Full record

ArticleBMC plant biology2023

The burdock database: a multi-omic database for Arctium lappa, a food and medicinal plant.

Yueyue Song, Yanyun Yang, Liang Xu, Che Bian, Yanping Xing, Hefei Xue, Wenjuan Hou, Wenxiao Men, Deqiang Dou, Tingguo Kang

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 13 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. The genome sequence of lesser burdock,Wellcome open research · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Yueyue Song *School of Pharmacy, Liaoning University of Traditional Chinese Medicine, Dalian, 116600, China.
Yanyun Yang *School of Pharmacy, Liaoning University of Traditional Chinese Medicine, Dalian, 116600, China.
Liang XuSchool of Pharmacy, Liaoning University of Traditional Chinese Medicine, Dalian, 116600, China. 861364054@qq.com.
Che BianSchool of Pharmacy, Liaoning University of Traditional Chinese Medicine, Dalian, 116600, China.
Yanping XingSchool of Pharmacy, Liaoning University of Traditional Chinese Medicine, Dalian, 116600, China.
Hefei XueSchool of Pharmacy, Liaoning University of Traditional Chinese Medicine, Dalian, 116600, China.
Wenjuan HouSchool of Pharmacy, Liaoning University of Traditional Chinese Medicine, Dalian, 116600, China.
Wenxiao MenSchool of Pharmacy, Liaoning University of Traditional Chinese Medicine, Dalian, 116600, China.
Deqiang DouSchool of Pharmacy, Liaoning University of Traditional Chinese Medicine, Dalian, 116600, China.
Tingguo KangSchool of Pharmacy, Liaoning University of Traditional Chinese Medicine, Dalian, 116600, China. kangtingguo@163.com.
Liaoning University of Traditional Chinese Medicine · CN

Funding

2019 Liaoning Provincial Department of Education Scientific Research Project No. L201942Liaoning BaiQianWan Talents Program No.2021A039Major Special Fund for Science and Technology of Inner Mongolia Autonomous Region No. 2019ZD004National Key Research and Development in the 13th Five-Year Plan No. 2018YFC1708200Natural Science Fund Project of Liaoning Province No. 2020-MS-224the National Natural Science Foundation of China General Program, Grant Numbers 81874338
6 · The paper itself

Abstract

backgroundBurdock is a biennial herb of Asteraceae found in Northern Europe, Eurasia, Siberia, and China. Its mature dry fruits, called Niu Bang Zi, are recorded in various traditional Chinese medicine books. With the development of sequencing technology, the mitochondrial, chloroplast, and nuclear genomes, transcriptome, and sequence-related amplified polymorphism (SRAP) fingerprints of burdock have all been reported. To make better use of this data for further research and analysis, a burdock database was constructed.

resultsThis burdock multi-omics database contains two burdock genome datasets, two transcriptome datasets, eight burdock chloroplast genomes, one burdock mitochondrial genome, one A. tomentosum chloroplast genome, one A. tomentosum mitochondrial genome, 26 phenotypes of burdock varieties, burdock rhizosphere-associated microorganisms, and chemical constituents of burdock fruit, pericarp, and kernel at different growth stages (using UPLC-Q-TOF-MS). The wild and cultivation distribution of burdock in China was summarized, and the main active components and pharmacological effects of burdock currently reported were concluded. The database contains ten central functional modules: Home, Genome, Transcriptome, Jbrowse, Search, Tools, SRAP fingerprints, Associated microorganisms, Chemical, and Publications. Among these, the "Tools" module can be used to perform sequence homology alignment (Blast), multiple sequence alignment analysis (Muscle), homologous protein prediction (Genewise), primer design (Primer), large-scale genome analysis (Lastz), and GO and KEGG enrichment analyses (GO Enrichment and KEGG Enrichment).

conclusionsThe database URL is http://210.22.121.250:41352/ . This burdock database integrates molecular and chemical data to provide a comprehensive information and analysis platform for interested researchers and can be of immense help to the cultivation, breeding, and molecular pharmacognosy research of burdock.

Indexed as

ArctiumPlants, MedicinalMedicine, Chinese TraditionalMultiomicsPlant BreedingPlant ExtractsPlant ExtractsArctium lappaDatabaseGenomeToolsTranscriptome

Identifiers

PMID36759759
PMCPMC9909940
OpenAlexW4319765889

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.