Evidence map›Paper›PMID 36759753›Full record

ArticleNature microbiology2023

Genetic mapping of microbial and host traits reveals production of immunomodulatory lipids by Akkermansia muciniphila in the murine gut.

Qijun Zhang, Vanessa Linke, Katherine A Overmyer, Lindsay L Traeger, Kazuyuki Kasahara, Ian J Miller, Daniel E Manson, Thomas J Polaske, Robert L Kerby, Julia H Kemis and 20 more

Erratum issuedOpen access · hybridAbstract read
In one paragraph

Article in Nature microbiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
10.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 46 citations in OpenAlex.

  1. Review
  2. Article
  3. Gut microbes · 2026
    Article
  4. Review
  5. Article
  6. Microbe on the move:Journal of bacteriology · 2026
    Review
  7. Article
  8. Article
  9. Review
  10. Review
  11. Review
  12. Ornithine lipids fromGut microbes · 2025
    Article
  13. Article
  14. Metabolomic profiling ofmSystems · 2025
    Article
  15. Article
  16. Article
  17. The Biology ofAnnual review of microbiology · 2025
    Review
  18. Article
  19. Article
  20. Metabolites · 2025
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

30 authors at 4 institutions in 2 countries.

Qijun Zhang *Department of Bacteriology, University of Wisconsin-Madison, Madison, WI, USA.ORCID 0000-0002-1003-7355
Vanessa Linke *Department of Chemistry, University of Wisconsin-Madison, Madison, WI, USA.ORCID 0000-0002-1827-577X
Katherine A OvermyerDepartment of Biomolecular Chemistry, University of Wisconsin-Madison, Madison, WI, USA.ORCID 0000-0002-1929-1229
Lindsay L TraegerDepartment of Bacteriology, University of Wisconsin-Madison, Madison, WI, USA.
Kazuyuki KasaharaDepartment of Bacteriology, University of Wisconsin-Madison, Madison, WI, USA.
Ian J MillerDepartment of Biomolecular Chemistry, University of Wisconsin-Madison, Madison, WI, USA.
Daniel E MansonDepartment of Chemistry, University of Wisconsin-Madison, Madison, WI, USA.
Thomas J PolaskeDepartment of Chemistry, University of Wisconsin-Madison, Madison, WI, USA.
Robert L KerbyDepartment of Bacteriology, University of Wisconsin-Madison, Madison, WI, USA.
Julia H KemisDepartment of Bacteriology, University of Wisconsin-Madison, Madison, WI, USA.
Edna A TrujilloDepartment of Chemistry, University of Wisconsin-Madison, Madison, WI, USA.
Thiru R ReddyDepartment of Chemistry, University of Wisconsin-Madison, Madison, WI, USA.
Jason D RussellDepartment of Chemistry, University of Wisconsin-Madison, Madison, WI, USA.
Kathryn L SchuelerDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI, USA.
Donald S StapletonDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI, USA.
Mary E RabagliaDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI, USA.
Marcus SeldinDepartments of Microbiology, Immunology and Molecular Genetics, and Human Genetics, University of California, Los Angeles, Los Angeles, CA, USA.
Daniel M GattiThe Jackson Laboratory, Bar Harbor, ME, USA.
Gregory R KeeleThe Jackson Laboratory, Bar Harbor, ME, USA.ORCID 0000-0002-1843-7900
Duy T PhamThe Jackson Laboratory, Bar Harbor, ME, USA.
Joseph P GerdtDepartment of Chemistry, Indiana University, Bloomington, IN, USA.ORCID 0000-0002-0375-4110
Eugenio I VivasDepartment of Bacteriology, University of Wisconsin-Madison, Madison, WI, USA.
Aldons J LusisDepartments of Microbiology, Immunology and Molecular Genetics, and Human Genetics, University of California, Los Angeles, Los Angeles, CA, USA.
Mark P KellerDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI, USA.
Gary A ChurchillThe Jackson Laboratory, Bar Harbor, ME, USA.
Helen E BlackwellDepartment of Chemistry, University of Wisconsin-Madison, Madison, WI, USA.ORCID 0000-0003-4261-8194
Karl W BromanDepartment of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, WI, USA.ORCID 0000-0002-4914-6671
Alan D AttieDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI, USA.
Joshua J CoonDepartment of Chemistry, University of Wisconsin-Madison, Madison, WI, USA.ORCID 0000-0002-0004-8253
Federico E ReyDepartment of Bacteriology, University of Wisconsin-Madison, Madison, WI, USA. ferey@wisc.edu.ORCID 0000-0002-0239-7780
University of Wisconsin–Madison · USJackson Laboratory · USUniversity of California, Los Angeles · USIndiana University Bloomington · US

Funding

Research Training for Computation and Informatics in Biology and MedicineT15LM007359 · NLM · UNIVERSITY OF WISCONSIN-MADISON · PI Mark W. Craven, Colin Noel Dewey · 2002 to 2026
$22.6M
Institutional Training in the Genomic SciencesT32HG002760 · NHGRI · UNIVERSITY OF WISCONSIN-MADISON · PI Qiongshi Lu · 2003 to 2026
$17.7M
TR&D 2 Metabolic Labels for Ultraplexed Protein Quantification p. 453P41GM108538 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI COON, JOSHUA J · 2016 to 2025
$13.1M
Chemistry-Biology Interface Training ProgramT32GM008505 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI BLACKWELL, HELEN E. · 1993 to 2023
$9.8M
TRAINING IN NUTRITIONT32DK007665 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI GUY E GROBLEWSKI, Chi- Liang Eric Yen · 1993 to 2026
$9.2M
Genetic Control of Metabolic Flux in Response to DietRC2DK125961 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI ATTIE, ALAN D · 2020 to 2024
$8.1M
Systems Genetic Analysis of Multi-parent CrossesR01GM070683 · NIGMS · JACKSON LABORATORY · PI BROMAN, KARL W, CHURCHILL, GARY A · 2004 to 2022
$6.8M
Microbial Pathogenesis &Host Responses Training ProgramT32AI055397 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI KLEIN, BRUCE STEVEN · 2003 to 2024
$5.5M
The Diversity Outbred Diabetes ProjectR01DK101573 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI Alan D Attie · 2014 to 2026
$5.3M
Systems Genetics Dissection of Non-alcoholic SteatohepatitisR01DK117850 · NIDDK · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Aldons Jake Lusis · 2019 to 2026
$4.6M
Elucidation of the first interspecies chemical signaling mechanisms in Capsaspora owczarzaki--the predator of a human pathogen and a model for the evolution of animal multicellularityR35GM138376 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI Joseph P. Gerdt · 2020 to 2026
$3.0M
Chemical Strategies to Modulate Intercellular Bacterial CommunicationR35GM131817 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI Helen E. Blackwell · 2019 to 2026
$2.9M
NHGRI NIH HHS T32 HG002760NHLBI NIH HHS R01 HL144651NHLBI NIH HHS R01 HL148577NIAID NIH HHS T32 AI055397NIDDK NIH HHS R01 DK101573NIDDK NIH HHS R01 DK108259NIDDK NIH HHS R01 DK117850NIDDK NIH HHS RC2 DK125961NIDDK NIH HHS T32 DK007665NIGMS NIH HHS P41 GM108538NIGMS NIH HHS R01 GM070683NIGMS NIH HHS R35 GM131817NIGMS NIH HHS R35 GM138376NIGMS NIH HHS T32 GM008505NLM NIH HHS T15 LM007359
6 · The paper itself

Abstract

The molecular bases of how host genetic variation impacts the gut microbiome remain largely unknown. Here we used a genetically diverse mouse population and applied systems genetics strategies to identify interactions between host and microbe phenotypes including microbial functions, using faecal metagenomics, small intestinal transcripts and caecal lipids that influence microbe-host dynamics. Quantitative trait locus (QTL) mapping identified murine genomic regions associated with variations in bacterial taxa; bacterial functions including motility, sporulation and lipopolysaccharide production and levels of bacterial- and host-derived lipids. We found overlapping QTL for the abundance of Akkermansia muciniphila and caecal levels of ornithine lipids. Follow-up in vitro and in vivo studies revealed that A. muciniphila is a major source of these lipids in the gut, provided evidence that ornithine lipids have immunomodulatory effects and identified intestinal transcripts co-regulated with these traits including Atf3, which encodes for a transcription factor that plays vital roles in modulating metabolism and immunity. Collectively, these results suggest that ornithine lipids are potentially important for A. muciniphila-host interactions and support the role of host genetics as a determinant of responses to gut microbes.

Indexed as

Gastrointestinal MicrobiomeVerrucomicrobiaAkkermansiaAnimalsMicePhenotype

Identifiers

PMID36759753
PMCPMC9981464
OpenAlexW4319825888

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.