Evidence map›Paper›PMID 36759613›Full record

ArticleNature communications2023

Splicing factor SRSF1 deficiency in the liver triggers NASH-like pathology and cell death.

Waqar Arif, Bhoomika Mathur, Michael F Saikali, Ullas V Chembazhi, Katelyn Toohill, You Jin Song, Qinyu Hao, Saman Karimi, Steven M Blue, Brian A Yee and 8 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed, 2 pooled it
6.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 2 syntheses or guidelines pooled it, 43 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Alternative Splicing Regulation in Metabolic Disorders.Obesity reviews : an official journal of the International Association for the Study of Obesity · 2025
    Review
  10. Article
  11. R-loops: a key driver of inflammatory responses in cancer.Experimental & molecular medicine · 2025
    Review
  12. Article
  13. Review
  14. Review
  15. Mechanisms underlining R-loop biology and implications for human disease.Frontiers in cell and developmental biology · 2025
    Review
  16. Review
  17. Article
  18. AAV-mediated genome editing is influenced by the formation of R-loops.Molecular therapy : the journal of the American Society of Gene Therapy · 2024
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 5 institutions in 2 countries.

Waqar ArifDepartment of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL, USA.ORCID 0000-0002-9252-0200
Bhoomika MathurDepartment of Molecular and Integrative Physiology, University of Illinois Urbana-Champaign, Urbana, IL, USA.ORCID 0000-0001-7146-1072
Michael F SaikaliDepartment of Pharmaceutical Sciences, Leslie Dan Faculty of Pharmacy, University of Toronto, Toronto, ON, Canada.
Ullas V ChembazhiDepartment of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL, USA.ORCID 0000-0002-6305-3156
Katelyn ToohillDepartment of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL, USA.
You Jin SongDepartment of Cell and Developmental Biology, University of Illinois Urbana-Champaign, Urbana, IL, USA.
Qinyu HaoDepartment of Cell and Developmental Biology, University of Illinois Urbana-Champaign, Urbana, IL, USA.
Saman KarimiDepartment of Pathology, College of Medicine, Cancer Center, University of Illinois Hospital and Health Science Chicago, Chicago, IL, USA.
Steven M BlueDepartment of Cellular and Molecular Medicine, University of California at San Diego, La Jolla, CA, USA.ORCID 0000-0003-0279-6690
Brian A YeeDepartment of Cellular and Molecular Medicine, University of California at San Diego, La Jolla, CA, USA.ORCID 0000-0001-5615-8550
Eric L Van NostrandDepartment of Cellular and Molecular Medicine, University of California at San Diego, La Jolla, CA, USA.ORCID 0000-0002-5188-0082
Sushant BangruDepartment of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL, USA.
Grace GuzmanDepartment of Pathology, College of Medicine, Cancer Center, University of Illinois Hospital and Health Science Chicago, Chicago, IL, USA.ORCID 0000-0001-7256-7223
Gene W YeoDepartment of Cellular and Molecular Medicine, University of California at San Diego, La Jolla, CA, USA.ORCID 0000-0002-0799-6037
Kannanganattu V PrasanthDepartment of Cell and Developmental Biology, University of Illinois Urbana-Champaign, Urbana, IL, USA.ORCID 0000-0003-4587-8362
Sayeepriyadarshini AnakkDepartment of Molecular and Integrative Physiology, University of Illinois Urbana-Champaign, Urbana, IL, USA.
Carolyn L CumminsDepartment of Pharmaceutical Sciences, Leslie Dan Faculty of Pharmacy, University of Toronto, Toronto, ON, Canada.ORCID 0000-0001-7603-6577
Auinash KalsotraDepartment of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL, USA. kalsotra@illinois.edu.ORCID 0000-0002-1011-0006
University of Illinois Urbana-Champaign · USUniversity of California San Diego · USUniversity of Illinois Chicago · USUniversity of Toronto · CABaylor College of Medicine · US

Funding

Functional RNA elements in the human genomeR01HG004659 · NHGRI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Kevin Daniel Corbett, Eugene Wei-Ming Yeo · 2008 to 2026
$12.4M
A Comprehensive Functional Map of Human Protein-RNA InteractionsU41HG009889 · NHGRI · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI GRAVELEY, BRENTON R. · 2018 to 2021
$9.4M
TNF ALPHA AND RECOVERY FROM ALCOHOLIC LIVER INJURYR01AA010154 · NIAAA · JOHNS HOPKINS UNIVERSITY · PI ANNA MAE ELIZABETH DIEHL, Auinash Kalsotra · 1994 to 2026
$6.1M
Post-transcriptional mechanisms of gene regulation in cardiac cell growth and developmentR01HL126845 · NHLBI · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI KALSOTRA, AUINASH · 2015 to 2023
$3.5M
Understanding Mechanisms that Regulate Liver Growth and FunctionR01DK113080 · NIDDK · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI Sayeepriyadarshini Anakk · 2017 to 2026
$3.3M
Tissue microenvironment (TIMe) training programT32EB019944 · NIBIB · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI BHARGAVA, ROHIT, GASKINS, REX · 2016 to 2025
$1.9M
Characterization of nuclear-retained RNA-mediated gene regulatory mechanismsR01GM132458 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI KANNANGANATTU, PRASANTH KUMAR VIJAYAN · 2020 to 2023
$1.4M
Robust, high-throughput identification of RNA processing regulators and regulatory networks genome-wideR00HG009530 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI VAN NOSTRAND, ERIC LYMAN · 2020 to 2022
$747k
Monoalleleic autosomal spreading of a novel family of nucleolus-localized ncRNAsR21AG065748 · NIA · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI KANNANGANATTU, PRASANTH KUMAR VIJAYAN · 2020 to 2021
$423k
Gene Regulatory Mechanisms Controlling Tissue Maturation and PolyploidizationR21HD104039 · NICHD · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI KALSOTRA, AUINASH · 2021 to 2022
$415k
Robust, high-throughput identification of RNA processing regulators and regulatory networks genome-wideK99HG009530 · NHGRI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI VAN NOSTRAND, ERIC LYMAN · 2017 to 2018
$250k
The role of SRSF1 in liver function and NASHF30DK108567 · NIDDK · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI ARIF, WAQAR · 2016 to 2020
$248k
NHGRI NIH HHS K99 HG009530NHGRI NIH HHS R00 HG009530NHGRI NIH HHS R01 HG004659NHGRI NIH HHS U41 HG009889NHLBI NIH HHS R01 HL126845NIAAA NIH HHS R01 AA010154NIA NIH HHS R21 AG065748NIBIB NIH HHS T32 EB019944NICHD NIH HHS R21 HD104039NIDDK NIH HHS F30 DK108567NIDDK NIH HHS R01 DK113080NIGMS NIH HHS R01 GM132458
6 · The paper itself

Abstract

Regulation of RNA processing contributes profoundly to tissue development and physiology. Here, we report that serine-arginine-rich splicing factor 1 (SRSF1) is essential for hepatocyte function and survival. Although SRSF1 is mainly known for its many roles in mRNA metabolism, it is also crucial for maintaining genome stability. We show that acute liver damage in the setting of targeted SRSF1 deletion in mice is associated with the excessive formation of deleterious RNA-DNA hybrids (R-loops), which induce DNA damage. Combining hepatocyte-specific transcriptome, proteome, and RNA binding analyses, we demonstrate that widespread genotoxic stress following SRSF1 depletion results in global inhibition of mRNA transcription and protein synthesis, leading to impaired metabolism and trafficking of lipids. Lipid accumulation in SRSF1-deficient hepatocytes is followed by necroptotic cell death, inflammation, and fibrosis, resulting in NASH-like liver pathology. Importantly, SRSF1-depleted human liver cancer cells recapitulate this pathogenesis, illustrating a conserved and fundamental role for SRSF1 in preserving genome integrity and tissue homeostasis. Thus, our study uncovers how the accumulation of detrimental R-loops impedes hepatocellular gene expression, triggering metabolic derangements and liver damage.

Indexed as

Non-alcoholic Fatty Liver DiseaseAlternative SplicingAnimalsHumansMiceRNARNA, MessengerRNA Splicing FactorsSerine-Arginine Splicing FactorsRNARNA, MessengerRNA Splicing FactorsSerine-Arginine Splicing FactorsSRSF1 protein, human

Identifiers

PMID36759613
PMCPMC9911759
OpenAlexW4319827670

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.