Evidence map›Paper›PMID 36750564›Full record

SynthesisNature communications2023

Multi-ancestry and multi-trait genome-wide association meta-analyses inform clinical risk prediction for systemic lupus erythematosus.

Chachrit Khunsriraksakul, Qinmengge Li, Havell Markus, Matthew T Patrick, Renan Sauteraud, Daniel McGuire, Xingyan Wang, Chen Wang, Lida Wang, Siyuan Chen and 8 more

Open access · goldAbstract readMeta-Analysis
In one paragraph

Synthesis in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers, 8 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed, 8 pooled it
16.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 8 syntheses or guidelines pooled it, 66 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Pooled it
  5. Pooled it
  6. Pooled it
  7. Pooled it
  8. Pooled it
  9. Trial
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 4 institutions in 2 countries.

Chachrit KhunsriraksakulProgram in Bioinformatics and Genomics, Pennsylvania State University College of Medicine, Hershey, PA, 17033, USA.ORCID 0000-0001-5131-1229
Qinmengge LiDepartment of Dermatology, University of Michigan Medical School, Ann Arbor, MI, 48109, USA.
Havell MarkusProgram in Bioinformatics and Genomics, Pennsylvania State University College of Medicine, Hershey, PA, 17033, USA.
Matthew T PatrickDepartment of Dermatology, University of Michigan Medical School, Ann Arbor, MI, 48109, USA.
Renan SauteraudDepartment of Public Health Sciences, Pennsylvania State University College of Medicine, Hershey, PA, 17033, USA.
Daniel McGuireDepartment of Public Health Sciences, Pennsylvania State University College of Medicine, Hershey, PA, 17033, USA.
Xingyan WangDepartment of Public Health Sciences, Pennsylvania State University College of Medicine, Hershey, PA, 17033, USA.
Chen WangProgram in Bioinformatics and Genomics, Pennsylvania State University College of Medicine, Hershey, PA, 17033, USA.ORCID 0000-0002-2727-7240
Lida WangDepartment of Public Health Sciences, Pennsylvania State University College of Medicine, Hershey, PA, 17033, USA.ORCID 0000-0002-7990-7347
Siyuan ChenDepartment of Public Health Sciences, Pennsylvania State University College of Medicine, Hershey, PA, 17033, USA.
Ganesh ShenoyDepartment of Neurosurgery, Pennsylvania State University College of Medicine, Hershey, PA, 17033, USA.
Bingshan LiDepartment of Molecular Physiology & Biophysics, Vanderbilt University, Nashville, TN, 37235, USA.ORCID 0000-0003-2129-168X
Xue ZhongDepartment of Medicine, Division of Genetic Medicine, Vanderbilt University Medical Center, Nashville, TN, 37232, USA.
Nancy J OlsenDepartment of Medicine, Pennsylvania State University College of Medicine, Hershey, PA, 17033, USA.
Laura CarrelDepartment of Biochemistry and Molecular Biology, Pennsylvania State University College of Medicine, Hershey, PA, 17033, USA.
Lam C TsoiDepartment of Dermatology, University of Michigan Medical School, Ann Arbor, MI, 48109, USA.
Bibo JiangDepartment of Public Health Sciences, Pennsylvania State University College of Medicine, Hershey, PA, 17033, USA.
Dajiang J LiuProgram in Bioinformatics and Genomics, Pennsylvania State University College of Medicine, Hershey, PA, 17033, USA. dajiang.liu@psu.edu.ORCID 0000-0001-6553-858X
Pennsylvania State University · USUniversity of Michigan · USVanderbilt University · USVanderbilt University Medical Center · US

Funding

Vanderbilt Institute for Clinical and Translational Research (VICTR) -Identifying correlates of functional immunity in SARS-CoV-2 convalescent plasmaUL1TR002243 · NCATS · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Paul A. Harris, Wesley H Self · 2017 to 2026
$130.7M
VANDERBILT UNIVERSITY CTSA FOR PEDIATRIC RESEARCHUL1RR024975 · NCRR · VANDERBILT UNIVERSITY · PI BERNARD, GORDON RAPHAEL · 2007 to 2011
$45.7M
The Vanderbilt Institute for Clinical and Translational Research (VICTR)UL1TR000445 · NCATS · VANDERBILT UNIVERSITY MEDICAL CENTER · PI BERNARD, GORDON RAPHAEL · 2012 to 2016
$41.4M
Pharmacogenomics of Arrhythmia TherapyU19HL065962 · NHLBI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI RODEN, DAN M · 2010 to 2014
$17.4M
Understanding and preventing HLA-associated drug reactionsP50GM115305 · NIGMS · VANDERBILT UNIVERSITY MEDICAL CENTER · PI DENNY, JOSHUA C. · 2015 to 2019
$13.0M
The Genetic Epemiology of Multiple SclerosisR01NS032830 · NINDS · VANDERBILT UNIVERSITY · PI HAINES, JONATHAN L · 1995 to 2010
$8.9M
Epidemiologic Architecture for Genes Linked to Environment (EAGLE)U01HG004798 · NHGRI · VANDERBILT UNIVERSITY · PI CRAWFORD, DANA C · 2008 to 2013
$8.8M
Study of Anti-Malarials in Incomplete Lupus Erythematosus (SMILE)U01AR071077 · NIAMS · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI KARP, DAVID R, OLSEN, NANCY J · 2017 to 2022
$6.8M
VESPA: Vanderbilt Electronic Systems for Pharmacogenomic AssessmentRC2GM092618 · NIGMS · VANDERBILT UNIVERSITY · PI DENNY, JOSHUA C., RODEN, DAN M · 2009 to 2010
$6.4M
Vanderbilt Genome Electronic Records ProjectU01HG006378 · NHGRI · VANDERBILT UNIVERSITY · PI RODEN, DAN M · 2011 to 2014
$4.0M
Methods to unveil sex-specific genetic architecture in trans-ancestry meta-analysisR01HG011035 · NHGRI · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI Bibo Jiang · 2022 to 2026
$3.8M
Understanding the genetic risk underlying racial disparities in uterine fibroids - Diversity SupplementR01HD074711 · NICHD · VANDERBILT UNIVERSITY MEDICAL CENTER · PI VELEZ EDWARDS, DIGNA R · 2013 to 2017
$2.9M
NCATS NIH HHS UL1 TR000445NCATS NIH HHS UL1 TR002243NCRR NIH HHS S10 RR025141NCRR NIH HHS UL1 RR024975NHGRI NIH HHS R01 HG008983NHGRI NIH HHS R01 HG011035NHGRI NIH HHS R56 HG011035NHGRI NIH HHS R56 HG012358NHGRI NIH HHS U01 HG004798NHGRI NIH HHS U01 HG006378NHLBI NIH HHS U19 HL065962NIAID NIH HHS R01 AI174108NIAID NIH HHS R21 AI160138NIAMS NIH HHS U01 AR071077NICHD NIH HHS R01 HD074711NIGMS NIH HHS P50 GM115305NIGMS NIH HHS R01 GM126479NIGMS NIH HHS RC2 GM092618NIGMS NIH HHS T32 GM118294NIH HHS R03 OD032630NIH HHS S10 OD017985NINDS NIH HHS R01 NS032830NLM NIH HHS T32 LM012415
6 · The paper itself

Abstract

Systemic lupus erythematosus is a heritable autoimmune disease that predominantly affects young women. To improve our understanding of genetic etiology, we conduct multi-ancestry and multi-trait meta-analysis of genome-wide association studies, encompassing 12 systemic lupus erythematosus cohorts from 3 different ancestries and 10 genetically correlated autoimmune diseases, and identify 16 novel loci. We also perform transcriptome-wide association studies, computational drug repurposing analysis, and cell type enrichment analysis. We discover putative drug classes, including a histone deacetylase inhibitor that could be repurposed to treat lupus. We also identify multiple cell types enriched with putative target genes, such as non-classical monocytes and B cells, which may be targeted for future therapeutics. Using this newly assembled result, we further construct polygenic risk score models and demonstrate that integrating polygenic risk score with clinical lab biomarkers improves the diagnostic accuracy of systemic lupus erythematosus using the Vanderbilt BioVU and Michigan Genomics Initiative biobanks.

Indexed as

Autoimmune DiseasesLupus Erythematosus, SystemicFemaleGenetic Predisposition to DiseaseGenome-Wide Association StudyHumansPhenotypePolymorphism, Single Nucleotide

Identifiers

PMID36750564
PMCPMC9905560
OpenAlexW4319348382

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.