Evidence map›Paper›PMID 36750456›Full record

ArticleAnnals of dermatology2023

Comparison of Risk Allele Frequencies of Psoriasis-Associated Single-Nucleotide Polymorphisms in Different Population Groups.

Donghoon Lee, Taehan Koo, Jiho Park, Hyun-Tae Shin

Abstract read
In one paragraph

Article in Annals of dermatology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
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2citing papers in PubMed
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1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

4 authors.

Donghoon LeeDepartment of Dermatology, Veterans Health Service Medical Center, Seoul, Korea.ORCID https://orcid.org/0000-0002-6341-7351
Taehan KooDepartment of Dermatology, Veterans Health Service Medical Center, Seoul, Korea.ORCID https://orcid.org/0000-0003-1053-9387
Jiho ParkOaro Dermatology Clinic, Seoul, Korea.ORCID https://orcid.org/0000-0003-2125-2488
Hyun-Tae ShinDepartment of Dermatology, Inha University College of Medicine, Incheon, Korea.ORCID https://orcid.org/0000-0003-1799-5860

Funding

Inha UniversityKorea Disease Control and Prevention Agency KBN-2021-005National Research Foundation of Korea 2021M3E5D1A02015185National Research Foundation of Korea NRF-2021R1A5A2031612
6 · The paper itself

Abstract

backgroundThe prevalence of psoriasis differs by population, and it appears to be more common among Europeans than in East Asians. Recent genome-wide association studies (GWAS) have identified alleles that increase the risk of psoriasis, and these alleles may present different frequencies in different geographic regions.

objectiveWe aimed to gain insights into the causes of differences in disease frequencies according to populations and the factors affecting prevalence and pattern differences.

methodsWe collected a total of 147 psoriasis-associated single-nucleotide polymorphisms (SNPs) from the GWAS catalog and compared the allele frequency differences in 27 populations using public population frequency in the 1000 Genomes Project phase 3 (n=2,504) and the Korean Reference Genome Database (n=1,722). Additionally, we calculated the composited genetic risk scores across the population groups.

resultsThere were distinct patterns of allele frequencies in different population groups. In many cases, East Asians exhibited allele frequencies opposite to that of Europeans. The genetic risk score was higher in Europeans (average: 0.487) and Americans (average: 0.492) than in East Asians (average: 0.471). The prevalence of psoriasis correlated with the average genetic risk score of the population.

conclusionWe observed a difference in the allele frequencies of psoriasis-associated SNPs between the studied populations. This result suggests that the difference in the prevalence of psoriasis between population groups can be interpreted to some extent by the genotype.

Indexed as

Allele frequencyPolymorphismPrevalencePsoriasissingle nucleotide

Identifiers

PMID36750456
PMCPMC9905865

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