Evidence map›Paper›PMID 36750096›Full record

ArticleCell2023

Structures of LRP2 reveal a molecular machine for endocytosis.

Andrew Beenken, Gabriele Cerutti, Julia Brasch, Yicheng Guo, Zizhang Sheng, Hediye Erdjument-Bromage, Zainab Aziz, Shelief Y Robbins-Juarez, Estefania Y Chavez, Goran Ahlsen and 5 more

Open access · greenAbstract read
In one paragraph

Article in Cell, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
13.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 63 citations in OpenAlex.

  1. Article
  2. Article
  3. Megalin: from structure to function.Nature reviews. Nephrology · 2026
    Review
  4. Article
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  17. Amyloid-mediated RNA uptake by sperm for embryonic delivery.bioRxiv : the preprint server for biology · 2025
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 1 country.

Andrew BeenkenDivision of Nephrology, Department of Medicine, Columbia University Vagelos College of Physicians and Surgeons, New York, NY 10032, USA.
Gabriele CeruttiZuckerman Mind Brain Behavior Institute, Columbia University, New York, NY 10027, USA.
Julia BraschDepartment of Biochemistry, University of Utah, Salt Lake City, UT 84112, USA.
Yicheng GuoAaron Diamond AIDS Research Center, Columbia University, New York, NY 10032, USA.
Zizhang ShengAaron Diamond AIDS Research Center, Columbia University, New York, NY 10032, USA.
Hediye Erdjument-BromageDepartment of Cell Biology, New York University Grossman School of Medicine, New York, NY 10016, USA.
Zainab AzizVagelos College of Physicians and Surgeons, Columbia University, New York, NY 10032, USA.
Shelief Y Robbins-JuarezDepartment of Medicine, Duke University Medical Center, Durham, NC 27710, USA.
Estefania Y ChavezDepartment of Pediatrics, Columbia University College of Physicians and Surgeons, New York, NY 10032, USA.
Goran AhlsenZuckerman Mind Brain Behavior Institute, Columbia University, New York, NY 10027, USA.
Phinikoula S KatsambaZuckerman Mind Brain Behavior Institute, Columbia University, New York, NY 10027, USA.
Thomas A NeubertDepartment of Cell Biology, New York University Grossman School of Medicine, New York, NY 10016, USA.
Anthony W P FitzpatrickZuckerman Mind Brain Behavior Institute, Columbia University, New York, NY 10027, USA; Department of Biochemistry and Molecular Biophysics, Columbia University Vagelos College of Physicians and Surgeons, New York, NY 10032, USA; Taub Institute for Research on Alzheimer's Disease and the Aging Brain, Columbia University Irving Medical Center, New York, NY 10032, USA. Electronic address: anthony.fitzpatrick@columbia.edu.
Jonathan BaraschDivision of Nephrology, Department of Medicine, Columbia University Vagelos College of Physicians and Surgeons, New York, NY 10032, USA; Department of Pathology and Cell Biology, Columbia University Vagelos College of Physicians and Surgeons, New York, NY 10032, USA; Columbia University George M. O'Brien Urology Center, New York, NY 10032, USA. Electronic address: jmb4@columbia.edu.
Lawrence ShapiroZuckerman Mind Brain Behavior Institute, Columbia University, New York, NY 10027, USA; Aaron Diamond AIDS Research Center, Columbia University, New York, NY 10032, USA; Department of Biochemistry and Molecular Biophysics, Columbia University Vagelos College of Physicians and Surgeons, New York, NY 10032, USA. Electronic address: lss8@columbia.edu.
Columbia University · USNew York University · USAaron Diamond AIDS Research Center · USDuke University Hospital · USUniversity of Utah · US

Funding

Clinical and Translational Science AwardUL1TR001873 · NCATS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI REILLY, MUREDACH P · 2016 to 2025
$99.0M
Transcriptional Regulation of Urothelial Differentiation During Homeostasis and Repair in Response to Urinary Tract InfectionU54DK104309 · NIDDK · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI JONATHAN M. BARASCH, ALI G GHARAVI · 2014 to 2026
$17.7M
Project 3: Neuropathology of the multi-proteinopathy of c9FTD/ALS.P01NS084974 · NINDS · MAYO CLINIC JACKSONVILLE · PI PETRUCELLI, LEONARD · 2014 to 2024
$17.6M
TRD #3: An automated and streamlined pipeline for in-situ molecular microscopyP41GM103310 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI DE MARCO, ALEX, KIEFT, JEFFREY S · 2012 to 2021
$14.7M
Utilization of proteomics and lipidomics to identify modifiers of LBDU54NS110435 · NINDS · MAYO CLINIC JACKSONVILLE · PI DICKSON, DENNIS WILLIAM, MCLEAN, PAMELA J · 2019 to 2023
$14.5M
NRSA Training CoreTL1TR001875 · NCATS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SPANN, MARISA N, TAYLOR, JACQUELYN Y · 2016 to 2025
$8.9M
Patient-Based Structural Biology of Tauopathies and TDP-43 Proteinopathies using Cryo-Electron Microscopy and Mass SpectrometryU01NS110438 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI FITZPATRICK, ANTHONY WILLIAM PAUL, PETRUCELLI, LEONARD · 2018 to 2022
$7.8M
Structure and mechanism of the protein-capture receptors of the kidney proximal tubuleR01DK124667 · NIDDK · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI BARASCH, JONATHAN M., SHAPIRO, LAWRENCE S · 2020 to 2023
$2.6M
Precision Medicine Research in NephrologyT32DK108741 · NIDDK · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI BARASCH, JONATHAN M., GHARAVI, ALI G · 2016 to 2020
$783k
Acquisition of Detector for JEOL 3200 FSC Electron MicroscopeS10OD019994 · OD · NEW YORK STRUCTURAL BIOLOGY CENTER · PI CARRAGHER, BRIDGET OLIVIA · 2015 to 2015
$600k
LTQ-Orbitrap Mass Spectrometer.S10RR027990 · NCRR · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI NEUBERT, THOMAS A · 2011 to 2011
$600k
NCATS NIH HHS TL1 TR001875NCATS NIH HHS UL1 TR001873NCRR NIH HHS S10 RR027990NIDDK NIH HHS R01 DK124667NIDDK NIH HHS T32 DK108741NIDDK NIH HHS U54 DK104309NIGMS NIH HHS P41 GM103310NIH HHS S10 OD019994NINDS NIH HHS P01 NS084974NINDS NIH HHS U01 NS110438NINDS NIH HHS U54 NS110435
6 · The paper itself

Abstract

The low-density lipoprotein (LDL) receptor-related protein 2 (LRP2 or megalin) is representative of the phylogenetically conserved subfamily of giant LDL receptor-related proteins, which function in endocytosis and are implicated in diseases of the kidney and brain. Here, we report high-resolution cryoelectron microscopy structures of LRP2 isolated from mouse kidney, at extracellular and endosomal pH. The structures reveal LRP2 to be a molecular machine that adopts a conformation for ligand binding at the cell surface and for ligand shedding in the endosome. LRP2 forms a homodimer, the conformational transformation of which is governed by pH-sensitive sites at both homodimer and intra-protomer interfaces. A subset of LRP2 deleterious missense variants in humans appears to impair homodimer assembly. These observations lay the foundation for further understanding the function and mechanism of LDL receptors and implicate homodimerization as a conserved feature of the LRP receptor subfamily.

Indexed as

EndocytosisLow Density Lipoprotein Receptor-Related Protein-2AnimalsCryoelectron MicroscopyHumansKidneyLigandsMiceLigandsLow Density Lipoprotein Receptor-Related Protein-2LRP2 protein, humanLrp2 protein, mouseCD91cryo-EMendocytosisLDLLRP1LRP2megalinpH-sensitiveproteinuriarecycling

Identifiers

PMID36750096
PMCPMC9993842
OpenAlexW4319312930

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.