Evidence map›Paper›PMID 36749016›Full record

ArticleeLife2023

Snf1/AMPK fine-tunes TORC1 signaling in response to glucose starvation.

Marco Caligaris, Raffaele Nicastro, Zehan Hu, Farida Tripodi, Johannes Erwin Hummel, Benjamin Pillet, Marie-Anne Deprez, Joris Winderickx, Sabine Rospert, Paola Coccetti and 2 more

Abstract read
In one paragraph

Article in eLife, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. An AI-Ready Phosphorylation Meta-Analysis forJournal of proteome research · 2026
    Pooled it
  2. Review
  3. SIRT1 Exon 2-Encoded IDR Gates CREB-Dependent Transcriptional Timing During Fasting.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2026
    Article
  4. Article
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  7. Experimental evolution of cellular miniaturization reveals a putative mechanism for cell size evolution.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Marco CaligarisDepartment of Biology, University of Fribourg, Fribourg, Switzerland.ORCID 0000-0003-1732-7694
Raffaele NicastroDepartment of Biology, University of Fribourg, Fribourg, Switzerland.ORCID 0000-0002-5420-2228
Zehan HuDepartment of Biology, University of Fribourg, Fribourg, Switzerland.
Farida TripodiDepartment of Biotechnology and Biosciences, University of Milano-Bicocca, Milano, Italy.ORCID 0000-0003-1246-979X
Johannes Erwin HummelInstitute of Biochemistry and Molecular Biology, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
Benjamin PilletDepartment of Biology, University of Fribourg, Fribourg, Switzerland.ORCID 0000-0002-7313-4304
Marie-Anne DeprezFunctional Biology, KU Leuven, Heverlee, Belgium.
Joris WinderickxFunctional Biology, KU Leuven, Heverlee, Belgium.ORCID 0000-0003-3133-7733
Sabine RospertInstitute of Biochemistry and Molecular Biology, Faculty of Medicine, University of Freiburg, Freiburg, Germany.ORCID 0000-0002-3089-9614
Paola CoccettiDepartment of Biotechnology and Biosciences, University of Milano-Bicocca, Milano, Italy.ORCID 0000-0001-5898-5883
Jörn DengjelDepartment of Biology, University of Fribourg, Fribourg, Switzerland.ORCID 0000-0002-9453-4614
Claudio De VirgilioDepartment of Biology, University of Fribourg, Fribourg, Switzerland.ORCID 0000-0001-8826-4323

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The AMP-activated protein kinase (AMPK) and the target of rapamycin complex 1 (TORC1) are central kinase modules of two opposing signaling pathways that control eukaryotic cell growth and metabolism in response to the availability of energy and nutrients. Accordingly, energy depletion activates AMPK to inhibit growth, while nutrients and high energy levels activate TORC1 to promote growth. Both in mammals and lower eukaryotes such as yeast, the AMPK and TORC1 pathways are wired to each other at different levels, which ensures homeostatic control of growth and metabolism. In this context, a previous study (Hughes Hallett et al., 2015) reported that AMPK in yeast, that is Snf1, prevents the transient TORC1 reactivation during the early phase following acute glucose starvation, but the underlying mechanism has remained elusive. Using a combination of unbiased mass spectrometry (MS)-based phosphoproteomics, genetic, biochemical, and physiological experiments, we show here that Snf1 temporally maintains TORC1 inactive in glucose-starved cells primarily through the TORC1-regulatory protein Pib2. Our data, therefore, extend the function of Pib2 to a hub that integrates both glucose and, as reported earlier, glutamine signals to control TORC1. We further demonstrate that Snf1 phosphorylates the TORC1 effector kinase Sch9 within its N-terminal region and thereby antagonizes the phosphorylation of a C-terminal TORC1-target residue within Sch9 itself that is critical for its activity. The consequences of Snf1-mediated phosphorylation of Pib2 and Sch9 are physiologically additive and sufficient to explain the role of Snf1 in short-term inhibition of TORC1 in acutely glucose-starved cells.

Indexed as

Saccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsAMP-Activated Protein KinasesAnimalsGlucoseMammalsMechanistic Target of Rapamycin Complex 1Protein Serine-Threonine KinasesAMP-Activated Protein KinasesGlucoseMechanistic Target of Rapamycin Complex 1Protein Serine-Threonine KinasesSaccharomyces cerevisiae ProteinsSNF1-related protein kinasesAMPKbiochemistrycell biologycell signalingchemical biologyglucose starvationproteomicsS. cerevisiaeSnf1TORC1

Identifiers

PMID36749016
PMCPMC9937656

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.