Evidence map›Paper›PMID 36748701›Full record

ArticleMicrobial genomics2022

PneumoKITy: A fast, flexible, specific, and sensitive tool for

Carmen L Sheppard, Sam Manna, Natalie Groves, David J Litt, Zahin Amin-Chowdhury, Marta Bertran, Shamez Ladhani, Catherine Satzke, Norman K Fry

Open access · goldAbstract read
In one paragraph

Article in Microbial genomics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed, 1 pooled it
4.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 1 synthesis or guideline pooled it, 31 citations in OpenAlex.

  1. Prevalence ofHuman vaccines & immunotherapeutics · 2024
    Pooled it
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Genomic surveillance of invasiveMicrobial genomics · 2025
    Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Genome sequences of 36Microbiology resource announcements · 2024
    Article
  18. Review
  19. Complete genome sequences of 11Microbiology resource announcements · 2024
    Article
  20. Microbiology spectrum · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Carmen L SheppardVaccine Preventable Bacteria Section, Respiratory and Vaccine Preventable Bacteria Reference Unit, UK Health Security Agency, London NW9 5EQ, UK.
Sam MannaTranslational Microbiology Group, Murdoch Children's Research Institute, The University of Melbourne Department of Paediatrics at the Royal Children's Hospital, Parkville, Victoria, Australia.
Natalie GrovesRespiratory and Vaccine Preventable Bacteria Reference Unit, UK Health Security Agency, London NW9 5EQ, UK.
David J LittVaccine Preventable Bacteria Section, Respiratory and Vaccine Preventable Bacteria Reference Unit, UK Health Security Agency, London NW9 5EQ, UK.
Zahin Amin-ChowdhuryImmunisation and Vaccine Preventable Diseases, UK Health Security Agency, London NW9 5EQ, UK.
Marta BertranImmunisation and Vaccine Preventable Diseases, UK Health Security Agency, London NW9 5EQ, UK.
Shamez LadhaniImmunisation and Vaccine Preventable Diseases, UK Health Security Agency, London NW9 5EQ, UK.
Catherine SatzkeTranslational Microbiology Group, Murdoch Children's Research Institute, The University of Melbourne Department of Paediatrics at the Royal Children's Hospital, Parkville, Victoria, Australia.
Norman K FryVaccine Preventable Bacteria Section, Respiratory and Vaccine Preventable Bacteria Reference Unit, UK Health Security Agency, London NW9 5EQ, UK.
UK Health Security Agency · GBRoyal Children's Hospital · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Determination of serotypes of

Indexed as

Pneumococcal VaccinesStreptococcus pneumoniaeSerogroupSerotypingWhole Genome SequencingPneumococcal VaccinesbioinformaticscarriagecolonisationdetectionepidemiologyPneumococcusserotypingsoftware

Identifiers

PMID36748701
PMCPMC9837567
OpenAlexW4311472910

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.