ArticleInternational journal of systematic and evolutionary microbiology2023
Collection and curation of prokaryotic genome assemblies from type strains at NCBI.
Article in International journal of systematic and evolutionary microbiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
12 citing papers in PubMed.
- An integrated genomic framework forMicrobial genomics · 2026Article
- Comparative genomics reveals specialization and divergent virulence potential inApplied and environmental microbiology · 2025Article
- DFAST_QC: quality assessment and taxonomic identification tool for prokaryotic Genomes.BMC bioinformatics · 2025Article
- Database resources of the National Center for Biotechnology Information in 2025.Nucleic acids research · 2025Article
- Improving the gold standard in NCBI GenBank and related databases: DNA sequences from type specimens and type strains.Systematic biology · 2024Article
- Whole genome sequencing data ofData in brief · 2024Article
- Preanalytical, Analytical and Postanalytical Analyses onDiagnostics (Basel, Switzerland) · 2024Article
- The ATCC genome portal: 3,938 authenticated microbial reference genomes.Microbiology resource announcements · 2024Article
- Database resources of the National Center for Biotechnology Information.Nucleic acids research · 2024Article
- RefSeq and the prokaryotic genome annotation pipeline in the age of metagenomes.Nucleic acids research · 2024Article
- Ten common issues with reference sequence databases and how to mitigate them.Frontiers in bioinformatics · 2024Review
- Rapid and sensitive detection of genome contamination at scale with FCS-GX.bioRxiv : the preprint server for biology · 2023Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
9 authors.
Funding
Abstract
The public sequence databases are entrusted with the dual responsibility of providing an accessible archive to all submitters and supporting data reliability and its re-use to all users. Genomes from type materials can act as an unambiguous reference for a taxonomic name and play an important role in comparative genomics, especially for taxon verification or reclassification. The National Center for Biotechnology Information (NCBI) collects and curates information on prokaryotic type strains and genomes from type strains. The average nucleotide identity (ANI)-based quality control processes introduced at NCBI to verify the genomes from type strains and improve related sequence records are detailed here. Using the curated genomes from type strains as reference, the taxonomy of over 1.1 million GenBank genomes were verified and the taxonomy of over 7000 new submissions before acceptance to GenBank and over 1800 existing genomes in GenBank were reclassified.
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What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.