Evidence map›Paper›PMID 36747893›Full record

ArticleGene reports2023

Evaluation of Tcell exhaustion based on the expression of EOMES, Tbet and co-inhibitory receptors in severe and non-severe covid-19 patients.

Amir Mohammad Saeedifar, Khodayar Ghorban, Ali Ganji, Ghasem Mosayebi, Mohammad Gholami, Maryam Dadmanesh, Negin Hosseini Rouzbahani

Open access · greenAbstract read
In one paragraph

Article in Gene reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.8field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Consequences of COVID-19 on Adipose Tissue Signatures.International journal of molecular sciences · 2024
    Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Amir Mohammad SaeedifarDepartment of Medical Immunology, Faculty of Medicine, Aja University of Medical Sciences, Tehran, Iran.
Khodayar GhorbanDepartment of Medical Immunology, Faculty of Medicine, Aja University of Medical Sciences, Tehran, Iran.
Ali GanjiDepartment of Immunology, School of Medicine, Arak University of Medical Sciences, Arak, Iran.
Ghasem MosayebiDepartment of Immunology, School of Medicine, Arak University of Medical Sciences, Arak, Iran.
Mohammad GholamiDepartment of Medical Microbiology, Faculty of Medicine, Aja University of Medical Sciences, Tehran, Iran.
Maryam DadmaneshInfectious Diseases Research Center, Aja University of Medical Sciences, Tehran, Iran.
Negin Hosseini RouzbahaniDepartment of Medical Immunology, Faculty of Medicine, Aja University of Medical Sciences, Tehran, Iran.
Aja University of Medical Sciences · IRArak University of Medical Sciences · IR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

During viral infections, especially Covid-19, Tcell exhaustion plays a crucial role in reducing the activity of lymphocytes and the immune system's antiviral activities. This research aimed to investigate the co-inhibitory receptors and transcription factors involved in the Tcell exhaustion process in ICU-admitted (ICUA) compared to non-ICU admitted (non-ICUA) Covid-19 patients. A total of 60 Covid-19 patients (30 patients in the severe group who were admitted in the ICU (ICUA) and 30 patients in the mild group who were admitted in departments other than the ICU (non-ICUA)) and 10 healthy individuals were included in this study. Laboratory tests and the level of gene expressions related to 4 inhibitory co-receptors, including LAG-3, TIM-3, TIGIT, PD-1, and T-bet and Eomes transcription factors involved in the process of Tcell exhaustion in severe and mild patients of Covid-19 were investigated. The results showed lymphopenia and an increase in other hematologic laboratory factors such as NLR, PLR, CRP, ALT, and AST in people with a severe form of the disease (ICUA) compared to mild groups (non-ICUA) (P < 0.001). Furthermore, a significant increase in 3 co-inhibitory receptors, TIM-3, LAG-3, and PD-1, was observed in severe patients compared to mild and healthy people (P < 0.001). An increase in TIGIT gene expression was lesser than the other three mentioned receptors (P < 0.05). Concerning the transcription factors, we observed a significant increase in Eomes in ICUA patients compared to the non-ICUA group (P < 0.001), and this increment in T-bet gene expression was minor compared to Eomes (P < 0.05). In conclusion, Patients with a severe form of acute respiratory syndrome coronavirus 2 (SARS-CoV-2) represented a higher level of gene expressions in terms of co-inhibitory receptors and transcription factors involved in the T cell exhaustion process.

Indexed as

Co-inhibitory receptorsCovid-19EOMES, eomesoderminICU, intensive care unitsLAG-3, lymphocyte-activation gene 3PD-1, programmed cell death protein 1T-bet, T-box expressed in TTcell exhaustionTIGIT, T-cell immunoglobulin and ITIM domainTIM-3, T cell immunoglobulin and mucin domain-containing protein 3Transcription factors

Identifiers

PMID36747893
PMCPMC9892327
OpenAlexW4319000913

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.