Evidence map›Paper›PMID 36747644›Full record

ArticlebioRxiv : the preprint server for biology2023

Ultrasensitive detection of circulating LINE-1 ORF1p as a specific multi-cancer biomarker.

Martin S Taylor, Wu Connie, Peter C Fridy, Stephanie J Zhang, Yasmeen Senussi, Justina C Wolters, Wen-Chih Cheng, John Heaps, Bryant D Miller, Kei Mori and 44 more

Open access · greenAbstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 11 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

54 authors at 8 institutions in 2 countries.

Wu Connie
Peter C Fridy
Stephanie J Zhang
Yasmeen Senussi
Justina C Wolters
Wen-Chih Cheng
John Heaps
Bryant D Miller
Kei Mori
Limor Cohen
Hua Jiang
Kelly R Molloy
Bryanna L Norden
Brian T Chait
Michael Goggins
Irun Bhan
Joseph W Franses
Xiaoyu Yang
Mary-Ellen Taplin
Xinan Wang
David C Christiani
Bruce E Johnson
Matthew Meyerson
Ravindra Uppaluri
Ann Marie Egloff
Elyssa N Denault
Laura M Spring
Tian-Li Wang
Ie-Ming Shih
Euihye Jung
Kshitij S Arora
Lawrence R Zukerberg
Osman H Yilmaz
Gary Chi
Ursula A Matulonis
Yuhui Song
Linda Nieman
Aparna R Parikh
Matthew Strickland
Ryan B Corcoran
Tomas Mustelin
George Eng
Ã-Mer H Yilmaz
Steven J Skates
Bo R Rueda
Ronny Drapkin
Samuel J Klempner
Vikram Deshpande
David T Ting
Michael P Rout
John LaCava
Harvard University · USBrigham and Women's Hospital · USRockefeller University · USJohns Hopkins University · USBeth Israel Deaconess Medical Center · USUniversity Medical Center Groningen · NLUniversity of Pennsylvania · USUniversity of Washington · US

Funding

TR&D Project 4. The Imaging Stage: Multiscale Spatiotemporal Modeling of Macromolecular Systems in Cellular NeighborhoodsP41GM109824 · NIGMS · ROCKEFELLER UNIVERSITY · PI ROUT, MICHAEL P · 2014 to 2023
$18.8M
RESEARCH TRAINING IN RHEUMATOLOGYT32AR007108 · NIAMS · UNIVERSITY OF WASHINGTON · PI Shaun Jackson, Tomas M Mustelin · 1986 to 2026
$6.6M
Understanding the Relationship of Repeat Expression and MetastasisR01CA240924 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI GREENBAUM, BENJAMIN, TING, DAVID TSAI · 2019 to 2023
$3.3M
Demonstrating interactome-level connections between Alzheimer disease, LINE-1 retrotransposons, and cellular senescenceR01GM126170 · NIGMS · ROCKEFELLER UNIVERSITY · PI LACAVA, JOHN · 2018 to 2021
$2.4M
Upstream drivers of type I interferons in lupusR01AI186337 · NIAID · UNIVERSITY OF WASHINGTON · PI Joanne Michelle Kahlenberg, John LaCava · 2024 to 2026
$2.3M
Role of the L1 retrotransposon in interferon-positive SLER01AR081654 · NIAMS · UNIVERSITY OF WASHINGTON · PI Tomas M Mustelin · 2023 to 2026
$2.1M
The roots of SLE: Can we cure it with a reverse transcriptase inhibitor?R21AR075134 · NIAMS · UNIVERSITY OF WASHINGTON · PI MUSTELIN, TOMAS M · 2019 to 2020
$427k
NCI NIH HHS R01 CA240924NIAID NIH HHS R01 AI186337NIAMS NIH HHS R01 AR081654NIAMS NIH HHS R21 AR075134NIAMS NIH HHS T32 AR007108NIGMS NIH HHS P41 GM109824NIGMS NIH HHS R01 GM126170
6 · The paper itself

Abstract

Improved biomarkers are needed for early cancer detection, risk stratification, treatment selection, and monitoring treatment response. While proteins can be useful blood-based biomarkers, many have limited sensitivity or specificity for these applications. Long INterspersed Element-1 (LINE-1, L1) open reading frame 1 protein (ORF1p) is a transposable element protein overexpressed in carcinomas and high-risk precursors during carcinogenesis with negligible detectable expression in corresponding normal tissues, suggesting ORF1p could be a highly specific cancer biomarker. To explore the potential of ORF1p as a blood-based biomarker, we engineered ultrasensitive digital immunoassays that detect mid-attomolar (10-17 M) ORF1p concentrations in patient plasma samples across multiple cancers with high specificity. Plasma ORF1p shows promise for early detection of ovarian cancer, improves diagnostic performance in a multi-analyte panel, and provides early therapeutic response monitoring in gastric and esophageal cancers. Together, these observations nominate ORF1p as a multi-cancer biomarker with potential utility for disease detection and monitoring.

Identifiers

PMID36747644
PMCPMC9900799
OpenAlexW4318034607

What OpenQuestion holds

Textmetadata
LicenceCC BY-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.