Evidence map›Paper›PMID 36744954›Full record

ArticlemBio2023

The Drug-Induced Interface That Drives HIV-1 Integrase Hypermultimerization and Loss of Function.

Matthew R Singer, Tung Dinh, Lev Levintov, Arun S Annamalai, Juan S Rey, Lorenzo Briganti, Nicola J Cook, Valerie E Pye, Ian A Taylor, Kyungjin Kim and 5 more

Open access · goldAbstract read
In one paragraph

Article in mBio, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 2 countries.

Matthew R SingerChromatin Structure & Mobile DNA Laboratory, The Francis Crick Institute, London, United Kingdom.
Tung Dinh *Division of Infectious Diseases, School of Medicine, University of Colorado, Aurora, Colorado, USA.
Lev Levintov *Department of Chemistry and Biochemistry, University of Delaware, Newark, Delaware, USA.
Arun S AnnamalaiDivision of Infectious Diseases, School of Medicine, University of Colorado, Aurora, Colorado, USA.
Juan S ReyDepartment of Chemistry and Biochemistry, University of Delaware, Newark, Delaware, USA.
Lorenzo BrigantiDivision of Infectious Diseases, School of Medicine, University of Colorado, Aurora, Colorado, USA.
Nicola J CookChromatin Structure & Mobile DNA Laboratory, The Francis Crick Institute, London, United Kingdom.
Valerie E PyeChromatin Structure & Mobile DNA Laboratory, The Francis Crick Institute, London, United Kingdom.
Ian A TaylorMacromolecular Structure Laboratory, The Francis Crick Institute, London, United Kingdom.
Kyungjin KimST Pharm Co. Ltd., Seoul, South Korea.
Alan N EngelmanDepartment of Cancer Immunology and Virology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Baek KimCenter for Drug Discovery, Children's Healthcare of Atlanta, Atlanta, Georgia, USA.
Juan R PerillaDepartment of Chemistry and Biochemistry, University of Delaware, Newark, Delaware, USA.ORCID 0000-0003-1171-6816
Mamuka KvaratskheliaDivision of Infectious Diseases, School of Medicine, University of Colorado, Aurora, Colorado, USA.ORCID 0000-0003-3800-0033
Peter CherepanovChromatin Structure & Mobile DNA Laboratory, The Francis Crick Institute, London, United Kingdom.ORCID 0000-0002-0634-538X
The Francis Crick Institute · GBUniversity of Colorado Anschutz Medical Campus · USUniversity of Delaware · USEmory University · USHarvard University · US

Funding

Project 3. IntegrationU54AI170791 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Peter Cherepanov · 2022 to 2026
$30.6M
This renovation project will create over 1455 sq. ft. of state- of-the-art reseaP20GM104316 · NIGMS · UNIVERSITY OF DELAWARE · PI FOX, JOSEPH M · 2014 to 2024
$26.8M
X-ray Crystallographic Fragment Screening CoreU54AI150472 · NIAID · SEATTLE CHILDREN'S HOSPITAL · PI OLSON, ARTHUR J. · 2019 to 2021
$15.7M
Technology Development 2: MAS NMR and dynamic nuclear polarization for HIV-1 structural biologyP50AI150481 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI XIONG, YONG · 2019 to 2021
$14.1M
Biochemical Mechanism of HIV DNA IntegrationR37AI039394 · NIAID · DANA-FARBER CANCER INST · PI Alan N. Engelman · 2010 to 2026
$10.2M
Structural and Chemical Analysis of Highly Potent ALLINI PlatformR01AI141327 · NIAID · EMORY UNIVERSITY · PI Baek Kim · 2018 to 2026
$3.7M
Multimeric HIV-1 Integrase InhibitorsR01AI143649 · NIAID · UNIVERSITY OF COLORADO DENVER · PI KVARATSKHELIA, MAMUKA · 2019 to 2023
$2.5M
Cancer Research UK CC2029Cancer Research UK CC2058Medical Research Council CC2029Medical Research Council CC2058NIAID NIH HHS P50 AI150481NIAID NIH HHS R01 AI141327NIAID NIH HHS R01 AI143649NIAID NIH HHS R37 AI039394NIAID NIH HHS U54 AI150472NIAID NIH HHS U54 AI170791NIGMS NIH HHS P20 GM104316Wellcome Trust CC2029Wellcome Trust CC2058
6 · The paper itself

Abstract

Allosteric HIV-1 integrase (IN) inhibitors (ALLINIs) are an emerging class of small molecules that disrupt viral maturation by inducing the aberrant multimerization of IN. Here, we present cocrystal structures of HIV-1 IN with two potent ALLINIs, namely, BI-D and the drug candidate Pirmitegravir. The structures reveal atomistic details of the ALLINI-induced interface between the HIV-1 IN catalytic core and carboxyl-terminal domains (CCD and CTD). Projecting from their principal binding pocket on the IN CCD dimer, the compounds act as molecular glue by engaging a triad of invariant HIV-1 IN CTD residues, namely, Tyr226, Trp235, and Lys266, to nucleate the CTD-CCD interaction. The drug-induced interface involves the CTD SH3-like fold and extends to the beginning of the IN carboxyl-terminal tail region. We show that mutations of HIV-1 IN CTD residues that participate in the interface with the CCD greatly reduce the IN-aggregation properties of Pirmitegravir. Our results explain the mechanism of the ALLINI-induced condensation of HIV-1 IN and provide a reliable template for the rational development of this series of antiretrovirals through the optimization of their key contacts with the viral target.

Indexed as

HIV InfectionsHIV Integrase InhibitorsAllosteric RegulationAntiviral AgentsHIV IntegraseHumansAntiviral AgentsHIV IntegraseHIV Integrase Inhibitorsp31 integrase protein, Human immunodeficiency virus 1ALLINIallosteric inhibitorantiretroviral drugsBI-DHIV-1integraseLEDGINPirmitegravirSTP0404

Identifiers

PMID36744954
PMCPMC9973045
OpenAlexW4319294276

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.