Evidence map›Paper›PMID 36743470›Full record

ArticlePNAS nexus2023

A "grappling hook" interaction connects self-assembly and chaperone activity of Nucleophosmin 1.

Mihkel Saluri, Axel Leppert, Genis Valentin Gese, Cagla Sahin, Dilraj Lama, Margit Kaldmäe, Gefei Chen, Arne Elofsson, Timothy M Allison, Marie Arsenian-Henriksson and 4 more

Open access · goldAbstract read
In one paragraph

Article in PNAS nexus, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 3 countries.

Mihkel SaluriDepartment of Microbiology, Tumor and Cell Biology, Karolinska Institutet - Biomedicum, Solnavägen 9, 171 65 Solna, Stockholm, Sweden.
Axel LeppertDepartment of Microbiology, Tumor and Cell Biology, Karolinska Institutet - Biomedicum, Solnavägen 9, 171 65 Solna, Stockholm, Sweden.ORCID https://orcid.org/0000-0001-6223-3350
Genis Valentin GeseDepartment of Cell and Molecular Biology, Karolinska Institutet - Biomedicum, Solnavägen 9, 171 65 Solna, Stockholm, Sweden.ORCID https://orcid.org/0000-0002-1890-5524
Cagla SahinDepartment of Microbiology, Tumor and Cell Biology, Karolinska Institutet - Biomedicum, Solnavägen 9, 171 65 Solna, Stockholm, Sweden.
Dilraj LamaDepartment of Microbiology, Tumor and Cell Biology, Karolinska Institutet - Biomedicum, Solnavägen 9, 171 65 Solna, Stockholm, Sweden.
Margit KaldmäeDepartment of Microbiology, Tumor and Cell Biology, Karolinska Institutet - Biomedicum, Solnavägen 9, 171 65 Solna, Stockholm, Sweden.
Gefei ChenDepartment of Biosciences and Nutrition, Karolinska Institutet, 141 57 Huddinge,, Sweden.ORCID https://orcid.org/0000-0002-5543-5963
Arne ElofssonScience for Life Laboratory and Department of Biochemistry and Biophysics, Stockholm University, 114 19 Stockholm, Sweden.ORCID https://orcid.org/0000-0002-7115-9751
Timothy M AllisonBiomolecular Interaction Centre, School of Physical and Chemical Sciences, University of Canterbury, Upper Riccarton, Christchurch 8041, New Zealand.
Marie Arsenian-HenrikssonDepartment of Microbiology, Tumor and Cell Biology, Karolinska Institutet - Biomedicum, Solnavägen 9, 171 65 Solna, Stockholm, Sweden.ORCID https://orcid.org/0000-0001-6376-7792
Jan JohanssonDepartment of Biosciences and Nutrition, Karolinska Institutet, 141 57 Huddinge,, Sweden.ORCID https://orcid.org/0000-0002-8719-4703
David P LaneDepartment of Microbiology, Tumor and Cell Biology, Karolinska Institutet - Biomedicum, Solnavägen 9, 171 65 Solna, Stockholm, Sweden.ORCID https://orcid.org/0000-0003-0551-3545
B Martin HällbergDepartment of Cell and Molecular Biology, Karolinska Institutet - Biomedicum, Solnavägen 9, 171 65 Solna, Stockholm, Sweden.
Michael LandrehDepartment of Microbiology, Tumor and Cell Biology, Karolinska Institutet - Biomedicum, Solnavägen 9, 171 65 Solna, Stockholm, Sweden.ORCID https://orcid.org/0000-0002-7958-4074
Karolinska Institutet · SEStockholm University · SEUniversity of Canterbury · NZUniversity of Copenhagen · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

How the self-assembly of partially disordered proteins generates functional compartments in the cytoplasm and particularly in the nucleus is poorly understood. Nucleophosmin 1 (NPM1) is an abundant nucleolar protein that forms large oligomers and undergoes liquid-liquid phase separation by binding RNA or ribosomal proteins. It provides the scaffold for ribosome assembly but also prevents protein aggregation as part of the cellular stress response. Here, we use aggregation assays and native mass spectrometry (MS) to examine the relationship between the self-assembly and chaperone activity of NPM1. We find that oligomerization of full-length NPM1 modulates its ability to retard amyloid formation in vitro. Machine learning-based structure prediction and cryo-electron microscopy reveal fuzzy interactions between the acidic disordered region and the C-terminal nucleotide-binding domain, which cross-link NPM1 pentamers into partially disordered oligomers. The addition of basic peptides results in a tighter association within the oligomers, reducing their capacity to prevent amyloid formation. Together, our findings show that NPM1 uses a "grappling hook" mechanism to form a network-like structure that traps aggregation-prone proteins. Nucleolar proteins and RNAs simultaneously modulate the association strength and chaperone activity, suggesting a mechanism by which nucleolar composition regulates the chaperone activity of NPM1.

Indexed as

amyloid formationmembraneless organellesmolecular chaperonesnative mass spectrometry

Identifiers

PMID36743470
PMCPMC9896144
OpenAlexW4313813722

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.