Evidence map›Paper›PMID 36740022›Full record

ArticleJournal of lipid research2023

FACS-assisted single-cell lipidome analysis of phosphatidylcholines and sphingomyelins in cells of different lineages.

Sarah E Hancock, Eileen Ding, Emma Johansson Beves, Todd Mitchell, Nigel Turner

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Article in Journal of lipid research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Development of a highly efficient solubilization method for mass spectrometric analysis of phospholipids in living single cells.Analytical sciences : the international journal of the Japan Society for Analytical Chemistry · 2024
    Article
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Sarah E HancockDepartment of Pharmacology, School of Biomedical Sciences, UNSW Sydney, Australia; Cellular Bioenergetics Laboratory, Victor Chang Cardiac Research Institute, Sydney, NSW, Australia. Electronic address: s.hancock@victochang.edu.au.
Eileen DingDepartment of Pharmacology, School of Biomedical Sciences, UNSW Sydney, Australia.
Emma Johansson BevesFlow Cytometry Unit, Mark Wainwright Analytical Centre, UNSW Sydney, Australia.
Todd MitchellSchool of Medicine, University of Wollongong, Wollongong Australia; Molecular Horizons, University of Wollongong, Wollongong Australia.
Nigel TurnerDepartment of Pharmacology, School of Biomedical Sciences, UNSW Sydney, Australia; Cellular Bioenergetics Laboratory, Victor Chang Cardiac Research Institute, Sydney, NSW, Australia. Electronic address: n.turner@victorchang.edu.au.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Recent advances in single-cell genomics and transcriptomics technologies have transformed our understanding of cellular heterogeneity in growth, development, ageing, and disease; however, methods for single-cell lipidomics have comparatively lagged behind in development. We have developed a method for the detection and quantification of a wide range of phosphatidylcholine and sphingomyelin species from single cells that combines fluorescence-assisted cell sorting with automated chip-based nanoESI and shotgun lipidomics. We show herein that our method is capable of quantifying more than 50 different phosphatidylcholine and sphingomyelin species from single cells and can easily distinguish between cells of different lineages or cells treated with exogenous fatty acids. Moreover, our method can detect more subtle differences in the lipidome between cell lines of the same cancer type. Our approach can be run in parallel with other single-cell technologies to deliver near-complete, high-throughput multi-omics data on cells with a similar phenotype and has the capacity to significantly advance our current knowledge on cellular heterogeneity.

Indexed as

PhosphatidylcholinesSphingomyelinsFatty AcidsLipidomicsFatty AcidsPhosphatidylcholinesSphingomyelinsglycerophospholipidslipidomicslipidsmass spectrometrynanoelectrospray ionizationomega-3 fatty acidsprostate cancershotgun lipidomicssingle-cell heterogeneitysphingolipids

Identifiers

PMID36740022
PMCPMC10027561

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.