Evidence map›Paper›PMID 36739402›Full record

ArticleJournal of translational medicine2023

Prognostic value of genetic aberrations and tumor immune microenvironment in primary acral melanoma.

Rong Huang, Gaigai Shen, Yu Ren, Kelin Zheng, Jiayu Wang, Yan Shi, Jiani C Yin, Lanqun Qin, Guiying Zhang, Mengke Zhao and 6 more

Open access · goldAbstract read
In one paragraph

Article in Journal of translational medicine, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Blocking CCR1Cell communication and signaling : CCS · 2025
    Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Establishment of a CD8+ T cells-related prognostic risk model for acral melanoma based on single-cell and bulk RNA sequencing.Skin research and technology : official journal of International Society for Bioengineering and the Skin (ISBS) [and] International Society for Digital Imaging of Skin (ISDIS) [and] International Society for Skin Imaging (ISSI) · 2024
    Article
  11. Review
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 2 countries.

Rong HuangDepartment of the Comprehensive Cancer Center, Affiliated Drum Tower Hospital, Medical School, Nanjing University, Nanjing, China.
Gaigai ShenNanjing Geneseeq Technology Inc., Nanjing, Jiangsu, China.
Yu RenDepartment of the Comprehensive Cancer Center, Affiliated Drum Tower Hospital, Medical School, Nanjing University, Nanjing, China.
Kelin ZhengNanjing Drum Tower Hospital Clinical College of Nanjing University of Chinese Medicine, Nanjing, China.
Jiayu WangNanjing Drum Tower Hospital Clinical College of Nanjing University of Chinese Medicine, Nanjing, China.
Yan ShiNanjing Geneseeq Technology Inc., Nanjing, Jiangsu, China.
Jiani C YinNanjing Geneseeq Technology Inc., Nanjing, Jiangsu, China.
Lanqun QinCancer Center, The Affiliated Changzhou No. 2 People's Hospital of Nanjing Medical University, Changzhou, China.
Guiying ZhangNanjing Drum Tower Hospital Clinical College of Nanjing University of Chinese Medicine, Nanjing, China.
Mengke ZhaoNanjing Drum Tower Hospital Clinical College of Nanjing Medical University, Nanjing, China.
Xinyu SuDepartment of the Comprehensive Cancer Center, Affiliated Drum Tower Hospital, Medical School, Nanjing University, Nanjing, China.
Luqiao LiDepartment of the Comprehensive Cancer Center, Affiliated Drum Tower Hospital, Medical School, Nanjing University, Nanjing, China.
Fufeng WangNanjing Geneseeq Technology Inc., Nanjing, Jiangsu, China.
Yang ShaoGeneseeq Research Institute, Nanjing Geneseeq Technology Inc., Nanjing, China.
Baorui LiuDepartment of the Comprehensive Cancer Center, Affiliated Drum Tower Hospital, Medical School, Nanjing University, Nanjing, China.
Zhengyun ZouDepartment of the Comprehensive Cancer Center, Affiliated Drum Tower Hospital, Medical School, Nanjing University, Nanjing, China. zouzhengyun@njglyy.com.ORCID 0000-0002-8719-6135
Nanjing Drum Tower Hospital · CNNanjing University of Chinese Medicine · CNChangzhou No.2 People's Hospital · CNNanjing Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAcral melanoma (AM) is the most common subtype in Chinese melanoma patients with a very poor prognosis. However, our understanding of the disease pathogenesis and molecular landscape is limited by the few studies that have been conducted. Here, we profiled the clinical characteristics, mutational landscapes and tumor immune microenvironment of AM patients to gain insights into disease characteristics and potential treatment strategies.

methodsA total of 90 AM patients were enrolled and their tissue samples were subjected to next-generation sequencing and multiplexed immunohistochemistry tests. Kaplan-Meier curves and log-rank tests were used to analyze the prognostic potential of various genetic aberrations and immune cell compositions in AM.

resultsThe median disease-free survival was 21.3 months and estimated median overall survival (OS) was 60 months. More advanced stages, older ages and thickness of greater than 4 mm were associated with worse prognosis in AM patients (HR = 2.57, 95% CI 1.25-5.29, p = 0.01; HR = 2.77, 95% CI 1.22-6.28, p = 0.02; HR = 3.43, 95% CI 1.51-7.82, p < 0.01, respectively), while patients who received post-surgical treatments had better survival (HR = 0.36, 95% CI 0.17-0.76, p = 0.01). The most frequently altered genes included BRAF (14.5%), KIT (16.9%), NRAS (12%), NF1 (10.8%), APC (7.2%), and ARID2 (6%). Copy number variations (CNV) were commonly found in CCND1 (19.3%), CDK4 (19.3%), MDM2 (14.5%) and FGF19 (12%). CDK4 amplifications was independently associated with shorter OS in AM patients (HR = 3.61, 95% CI 1.38-9.46, p = 0.01). CD8

conclusionsOur study provided a comprehensive portrait of the clinicopathological features, genetic aberrations and tumor microenvironment profiles in AM patients and identified candidate prognostic factors, which may facilitate development of additional therapeutic options and better inform clinical management of AM patients. Based on these prognostic factors, further studies should focus on enhancing the infiltration of M1 macrophages, especially in CDK4-amplified AM patients.

Indexed as

MelanomaSkin NeoplasmsCutaneous Malignant MelanomaDNA Copy Number VariationsHumansPrognosisTumor MicroenvironmentAcral melanomaCDK4M1 macrophagesPrognostic factorsTumor immune microenvironment

Identifiers

PMID36739402
PMCPMC9898922
OpenAlexW4319163908

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.