Evidence map›Paper›PMID 36737607›Full record

ArticleNature communications2023

Emergence of a proton exchange-based isomerization and lactonization mechanism in the plant coumarin synthase COSY.

Colin Y Kim, Andrew J Mitchell, David W Kastner, Claire E Albright, Michael A Gutierrez, Christopher M Glinkerman, Heather J Kulik, Jing-Ke Weng

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 20 citations in OpenAlex.

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  8. Structural identification of catalytic His158 of PtMAC2p fromFrontiers in bioengineering and biotechnology · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Colin Y KimWhitehead Institute for Biomedical Research, Cambridge, MA, 02142, USA.ORCID 0000-0001-9583-9789
Andrew J MitchellWhitehead Institute for Biomedical Research, Cambridge, MA, 02142, USA.
David W KastnerDepartment of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.ORCID 0000-0002-7766-4249
Claire E AlbrightWhitehead Institute for Biomedical Research, Cambridge, MA, 02142, USA.
Michael A GutierrezWhitehead Institute for Biomedical Research, Cambridge, MA, 02142, USA.ORCID 0000-0002-1089-5384
Christopher M GlinkermanWhitehead Institute for Biomedical Research, Cambridge, MA, 02142, USA.
Heather J KulikDepartment of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.ORCID 0000-0001-9342-0191
Jing-Ke WengWhitehead Institute for Biomedical Research, Cambridge, MA, 02142, USA. wengj@wi.mit.edu.ORCID 0000-0003-3059-0075
Whitehead Institute for Biomedical Research · USMassachusetts Institute of Technology · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plants contain rapidly evolving specialized enzymes that support the biosynthesis of functionally diverse natural products. In coumarin biosynthesis, a BAHD acyltransferase-family enzyme COSY was recently discovered to accelerate coumarin formation as the only known BAHD enzyme to catalyze an intramolecular acyl transfer reaction. Here we investigate the structural and mechanistic basis for COSY's coumarin synthase activity. Our structural analyses reveal an unconventional active-site configuration adapted to COSY's specialized activity. Through mutagenesis studies and deuterium exchange experiments, we identify a unique proton exchange mechanism at the α-carbon of the o-hydroxylated trans-hydroxycinnamoyl-CoA substrates during the catalytic cycle of COSY. Quantum mechanical cluster modeling and molecular dynamics further support this key mechanism for lowering the activation energy of the rate-limiting trans-to-cis isomerization step in coumarin production. This study unveils an unconventional catalytic mechanism mediated by a BAHD-family enzyme, and sheds light on COSY's evolutionary origin and its recruitment to coumarin biosynthesis in eudicots.

Indexed as

PlantsProtonsAcyltransferasesCoumarinsIsomerismAcyltransferasesCoumarinsProtons

Identifiers

PMID36737607
PMCPMC9898226
OpenAlexW4319078070

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.