Evidence map›Paper›PMID 36734611›Full record

ArticleMolecular oncology2023

Target Finder of Transcription Factor (TFoTF): a novel tool to predict transcription factor-targeted genes in cancer.

Fanchen Wang, Xiaolin Xu, Xin Li, Jia Yuan, Xuzhu Gao, Chenglong Wang, Wencai Guan, Guoxiong Xu

Open access · goldAbstract read
In one paragraph

Article in Molecular oncology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 2 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Fanchen WangResearch Center for Clinical Medicine, Jinshan Hospital, Fudan University, Shanghai, China.
Xiaolin XuResearch Center for Clinical Medicine, Jinshan Hospital, Fudan University, Shanghai, China.
Xin LiResearch Center for Clinical Medicine, Jinshan Hospital, Fudan University, Shanghai, China.
Jia YuanResearch Center for Clinical Medicine, Jinshan Hospital, Fudan University, Shanghai, China.
Xuzhu GaoResearch Center for Clinical Medicine, Jinshan Hospital, Fudan University, Shanghai, China.
Chenglong WangResearch Center for Clinical Medicine, Jinshan Hospital, Fudan University, Shanghai, China.
Wencai GuanResearch Center for Clinical Medicine, Jinshan Hospital, Fudan University, Shanghai, China.
Guoxiong XuResearch Center for Clinical Medicine, Jinshan Hospital, Fudan University, Shanghai, China.ORCID 0000-0002-9074-8754
Shanghai Medical College of Fudan University · CNJinshan Hospital of Fudan University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Transcription factors (TFs) are key players in the regulation of gene transcription in mammalian cells. Although high-throughput screening can be used to identify differentially expressed genes between comparable groups, the precision of the corresponding datasets is far from optimal. Here, we establish Target Finder of Transcription Factor (TFoTF), a method for the prediction of TF-targeted genes from genomic and cancer-related transcriptomic data. TFoTF can identify potential TF-targeted genes in large cancer datasets and efficiently estimate correlations between TFs and their targeted genes with a significant level of specificity, sensitivity, and precision. Overall, TFoTF is an easy-to-use tool that can be utilized to generate testable hypotheses in the context of cancer research projects.

Indexed as

NeoplasmsTranscription FactorsAnimalsGene Expression ProfilingGene Expression RegulationHumansMammalsTranscriptomeTranscription Factorsgene expressionposition weight matricesSTAT1transcriptional regulationtumorigenesis

Identifiers

PMID36734611
PMCPMC10323881
OpenAlexW4319061390

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.