Evidence map›Paper›PMID 36732712›Full record

ArticleBMC pediatrics2023

A variant of RAG1 gene identified in severe combined immunodeficiency: a case report.

Xinping Zhang, Xiayan Kang, Meiyu Yang, Zili Cai, Yulei Song, Xiong Zhou, Jianshe Cao, Chengjuan Wang, Kang Huang, Yani Peng and 2 more

Open access · goldAbstract readCase Reports
In one paragraph

Article in BMC pediatrics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 2 citations in OpenAlex.

  1. Article
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  3. Review
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 1 institution in 1 country.

Xinping ZhangDepartment of Pediatric Intensive Care Unit of Hunan Children's Hospital, Changsha, Hunan, People's Republic of China.
Xiayan KangDepartment of Pediatric Intensive Care Unit of Hunan Children's Hospital, Changsha, Hunan, People's Republic of China.
Meiyu YangDepartment of Pediatric Intensive Care Unit of Hunan Children's Hospital, Changsha, Hunan, People's Republic of China.
Zili CaiDepartment of Pediatric Intensive Care Unit of Hunan Children's Hospital, Changsha, Hunan, People's Republic of China.
Yulei SongDepartment of Pediatric Intensive Care Unit of Hunan Children's Hospital, Changsha, Hunan, People's Republic of China.
Xiong ZhouDepartment of Pediatric Intensive Care Unit of Hunan Children's Hospital, Changsha, Hunan, People's Republic of China.
Jianshe CaoDepartment of Pediatric Intensive Care Unit of Hunan Children's Hospital, Changsha, Hunan, People's Republic of China.
Chengjuan WangDepartment of Pediatric Intensive Care Unit of Hunan Children's Hospital, Changsha, Hunan, People's Republic of China.
Kang HuangDepartment of Pediatric Intensive Care Unit of Hunan Children's Hospital, Changsha, Hunan, People's Republic of China.
Yani PengDepartment of Pediatric Intensive Care Unit of Hunan Children's Hospital, Changsha, Hunan, People's Republic of China.
Jie HeDepartment of Pediatric Intensive Care Unit of Hunan Children's Hospital, Changsha, Hunan, People's Republic of China.
Zhenghui XiaoDepartment of Pediatric Intensive Care Unit of Hunan Children's Hospital, Changsha, Hunan, People's Republic of China. 3558505778@qq.com.
Hunan Children's Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe recombination-activating gene 1 (RAG1) protein is essential for the V (variable)-D (diversity)-J (joining) recombination process. Mutations in RAG1 have been reported to be associated with several types of immune disorders. Typical clinical features driven by RAG1 variants include persistent infections, severe lymphopenia, and decreased immunoglobulin levels . CASE PRESENTATION: In this study, a 2-month-24-days-old infant with recurrent fever was admitted to our hospital with multiple infections and absence of T and B lymphocytes. The infant was diagnosed with severe combined immunodeficiency (SCID). A homozygous variation c.2147G>A (NM_000448.2: exonme2: c.2147G>A (p.Arg716Gln)) was identified in the RAG1 gene using whole-exome sequencing and Sanger sequencing. The predicted 3D structure of variant RAG1 indicated altered protein stability. Additionally, decreased expression of variant RAG1 gene was detected at both the mRNA and protein levels.

conclusionsOur study identified a novel homozygous variant in RAG1 gene that causes SCID. This finding expands the variant spectrum of RAG1 in SCID and provides further evidence for the clinical diagnosis of SCID.

Indexed as

Severe Combined ImmunodeficiencyGenes, RAG-1Homeodomain ProteinsHumansInfantMutationT-LymphocytesHomeodomain Proteinsmissense variantRAG deficiencysevere combined immunodeficiencywhole-exome sequencing

Identifiers

PMID36732712
PMCPMC9896705
OpenAlexW4319063024

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.