Evidence map›Paper›PMID 36727438›Full record

ArticleNucleic acids research2023

Simultaneous inhibition of endocytic recycling and lysosomal fusion sensitizes cells and tissues to oligonucleotide therapeutics.

Brendan T Finicle, Kazumi H Eckenstein, Alexey S Revenko, Brooke A Anderson, W Brad Wan, Alison N McCracken, Daniel Gil, David A Fruman, Stephen Hanessian, Punit P Seth and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Review
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  5. Article
  6. Article
  7. Review
  8. Review
  9. Long Non-coding RNA Based Therapy for Cardiovascular Disease.Journal of cardiovascular translational research · 2025
    Review
  10. Article
  11. Article
  12. Review
  13. Review
  14. Review
  15. Synergistic integration of mRNA-LNP with CAR-engineered immune cells: Pioneering progress in immunotherapy.Molecular therapy : the journal of the American Society of Gene Therapy · 2024
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 2 countries.

Brendan T FinicleDepartment of Developmental and Cell Biology, University of California Irvine, Irvine, CA, USA.ORCID 0000-0002-1616-5075
Kazumi H EckensteinDepartment of Developmental and Cell Biology, University of California Irvine, Irvine, CA, USA.
Alexey S RevenkoIonis Pharmaceuticals, Carlsbad, CA, USA.
Brooke A AndersonIonis Pharmaceuticals, Carlsbad, CA, USA.
W Brad WanIonis Pharmaceuticals, Carlsbad, CA, USA.
Alison N McCrackenSiege Pharmaceuticals, Irvine, CA, USA.
Daniel GilSiege Pharmaceuticals, Irvine, CA, USA.
David A FrumanDepartment of Molecular Biology and Biochemistry, University of California Irvine, Irvine, CA, USA.
Stephen HanessianDepartment of Chemistry, Université de Montréal, Montréal, QC, Canada.
Punit P SethIonis Pharmaceuticals, Carlsbad, CA, USA.ORCID 0000-0002-1783-7806
Aimee L EdingerDepartment of Developmental and Cell Biology, University of California Irvine, Irvine, CA, USA.ORCID 0000-0003-4277-4584
University of California, Irvine · USIonis Pharmaceuticals (United States) · US

Funding

Univ.of Calif., Irvine Cancer Center Support GrantP30CA062203 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI Melanie Funes · 1994 to 2026
$57.9M
CARCINOGENESIST32CA009054 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI EDINGER, AIMEE L, FRUMAN, DAVID ALEXANDER · 1985 to 2025
$8.6M
Development of synthetic sphingolipids for prostate cancer therapyR44CA257568 · NCI · SIEGE PHARMACEUTICALS, INC. · PI MCCRACKEN, ALISON NICOLE · 2020 to 2021
$2.0M
Targeting intracellular trafficking for cancer therapyF99CA264430 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI FINICLE, BRENDAN TYLER · 2021 to 2022
$84k
Targeting endolysosomal trafficking to increase delivery of antisense oligonucleotides to tumorsF31CA261085 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI FINICLE, BRENDAN TYLER · 2021 to 2021
$18k
NCI NIH HHS F31 CA261085NCI NIH HHS F99 CA264430NCI NIH HHS P30 CA062203NCI NIH HHS R44 CA257568NCI NIH HHS T32 CA009054
6 · The paper itself

Abstract

Inefficient endosomal escape remains the primary barrier to the broad application of oligonucleotide therapeutics. Liver uptake after systemic administration is sufficiently robust that a therapeutic effect can be achieved but targeting extrahepatic tissues remains challenging. Prior attempts to improve oligonucleotide activity using small molecules that increase the leakiness of endosomes have failed due to unacceptable toxicity. Here, we show that the well-tolerated and orally bioavailable synthetic sphingolipid analog, SH-BC-893, increases the activity of antisense oligonucleotides (ASOs) and small interfering RNAs (siRNAs) up to 200-fold in vitro without permeabilizing endosomes. SH-BC-893 treatment trapped endocytosed oligonucleotides within extra-lysosomal compartments thought to be more permeable due to frequent membrane fission and fusion events. Simultaneous disruption of ARF6-dependent endocytic recycling and PIKfyve-dependent lysosomal fusion was necessary and sufficient for SH-BC-893 to increase non-lysosomal oligonucleotide levels and enhance their activity. In mice, oral administration of SH-BC-893 increased ASO potency in the liver by 15-fold without toxicity. More importantly, SH-BC-893 enabled target RNA knockdown in the CNS and lungs of mice treated subcutaneously with cholesterol-functionalized duplexed oligonucleotides or unmodified ASOs, respectively. Together, these results establish the feasibility of using a small molecule that disrupts endolysosomal trafficking to improve the activity of oligonucleotides in extrahepatic tissues.

Indexed as

EndosomesOligonucleotidesAnimalsBiological TransportEndocytosisMiceOligonucleotides, AntisenseRNA, Small InterferingOligonucleotidesOligonucleotides, AntisenseRNA, Small Interfering

Identifiers

PMID36727438
PMCPMC9976930
OpenAlexW4318915475

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.