Evidence map›Paper›PMID 36726432›Full record

ArticleClinical kidney journal2023

The use of plasma biomarker-derived clusters for clinicopathologic phenotyping: results from the Boston Kidney Biopsy Cohort.

Insa M Schmidt, Steele Myrick, Jing Liu, Ashish Verma, Anand Srivastava, Ragnar Palsson, Ingrid F Onul, Isaac E Stillman, Claire Avillach, Prasad Patil and 1 more

Open access · goldAbstract read
In one paragraph

Article in Clinical kidney journal, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.1field-weighted citation impact, top 51% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 2 countries.

Insa M SchmidtBoston University School of Medicine and Boston Medical Center, Department of Medicine, Section of Nephrology, Boston, MA, USA.
Steele MyrickBoston University School of Public Health, Department of Biostatistics, Boston, MA, USA.
Jing LiuDivision of Nephrology and National Clinical Research Center for Geriatrics, Kidney Research Institute, West China Hospital of Sichuan University, Chengdu, China.ORCID https://orcid.org/0000-0001-8802-0783
Ashish VermaBoston University School of Medicine and Boston Medical Center, Department of Medicine, Section of Nephrology, Boston, MA, USA.ORCID https://orcid.org/0000-0001-9497-6327
Anand SrivastavaCenter for Translational Metabolism and Health, Institute for Public Health and Medicine, Division of Nephrology and Hypertension, Northwestern University Feinberg School of Medicine, Chicago, IL, USA.
Ragnar PalssonDivision of Nephrology, Department of Medicine, Massachusetts General Hospital, Boston, MA, USA.
Ingrid F OnulBoston University School of Medicine and Boston Medical Center, Department of Medicine, Section of Nephrology, Boston, MA, USA.
Isaac E StillmanBeth Israel Deaconess Medical Center, Harvard Medical School, Department of Pathology, Boston, MA, USA.
Claire AvillachBoston Medical Center, Department of Pathology, Boston, MA, USA.
Prasad PatilBoston University School of Public Health, Department of Biostatistics, Boston, MA, USA.
Sushrut S WaikarBoston University School of Medicine and Boston Medical Center, Department of Medicine, Section of Nephrology, Boston, MA, USA.
Boston University · USBeth Israel Deaconess Medical Center · USBoston Medical Center · USMassachusetts General Hospital · USNorthwestern University · USSichuan University · CN

Funding

Harvard Clinical and Translational Science CenterUL1TR001102 · NCATS · HARVARD MEDICAL SCHOOL · PI NADLER, LEE MARSHALL · 2013 to 2017
$106.2M
ConProject-002U2CDK114886 · NIDDK · UNIVERSITY OF WASHINGTON · PI HIMMELFARB, JONATHAN, IYENGAR, SRINIVAS RAVI V · 2017 to 2021
$21.0M
Therapeutics Development Core (Core B)P30DK114857 · NIDDK · NORTHWESTERN UNIVERSITY AT CHICAGO · PI LUO, XUNRONG · 2018 to 2022
$5.7M
Urinary Biomarkers of Chronic Kidney Disease Pathology and ProgressionU01DK085660 · NIDDK · BRIGHAM AND WOMEN'S HOSPITAL · PI BONVENTRE, JOSEPH VINCENT, WAIKAR, SUSHRUT S. · 2009 to 2019
$5.3M
Biomarkers of Kidney PathologyR01DK093574 · NIDDK · BRIGHAM AND WOMEN'S HOSPITAL · PI WAIKAR, SUSHRUT S. · 2012 to 2015
$2.4M
Development of a novel community-based high-performance surveillance network for drug useDP2DA051864 · NIDA · UNIVERSITY OF COLORADO DENVER · PI BAROCAS, JOSHUA ADAM · 2020 to 2020
$2.3M
Novel Human Biomarkers of Kidney FibrosisU01DK104308 · NIDDK · BRIGHAM AND WOMEN'S HOSPITAL · PI HUMPHREYS, BENJAMIN D., WAIKAR, SUSHRUT S. · 2014 to 2018
$2.0M
Supplement to Methods to Estimate the Effect of Interventions on the Incidence and Transmission of TuberculosisR01GM122876 · NIGMS · BOSTON UNIVERSITY MEDICAL CAMPUS · PI WHITE, LAURA FORSBERG · 2017 to 2021
$1.9M
Oxalate and the Progression and Complications of CKDR01DK103784 · NIDDK · BRIGHAM AND WOMEN'S HOSPITAL · PI WAIKAR, SUSHRUT S. · 2015 to 2018
$1.6M
Non-Invasive Imaging Biomarkers to Identify a High-Risk Chronic Kidney Disease PhenotypeK23DK120811 · NIDDK · UNIVERSITY OF ILLINOIS AT CHICAGO · PI SRIVASTAVA, ANAND · 2020 to 2024
$1.0M
Harvard Chronic Kidney Disease Research Biopsy CenterUH3DK114915 · NIDDK · BRIGHAM AND WOMEN'S HOSPITAL · PI ROSAS, SYLVIA E, WAIKAR, SUSHRUT S. · 2019 to 2021
$900k
Metabolomics and Renal Functional ReserveR21DK119751 · NIDDK · BOSTON MEDICAL CENTER · PI WAIKAR, SUSHRUT S. · 2019 to 2020
$503k
NCATS NIH HHS UL1 TR001102NIDA NIH HHS DP2 DA051864NIDDK NIH HHS K23 DK120811NIDDK NIH HHS P30 DK114857NIDDK NIH HHS R01 DK093574NIDDK NIH HHS R01 DK103784NIDDK NIH HHS R21 DK119751NIDDK NIH HHS U01 DK085660NIDDK NIH HHS U01 DK104308NIDDK NIH HHS U2C DK114886NIDDK NIH HHS UH3 DK114915NIGMS NIH HHS R01 GM122876
6 · The paper itself

Abstract

Background: Protein biomarkers may provide insight into kidney disease pathology but their use for the identification of phenotypically distinct kidney diseases has not been evaluated. Methods: We used unsupervised hierarchical clustering on 225 plasma biomarkers in 541 individuals enrolled into the Boston Kidney Biopsy Cohort, a prospective cohort study of individuals undergoing kidney biopsy with adjudicated histopathology. Using principal component analysis, we studied biomarker levels by cluster and examined differences in clinicopathologic diagnoses and histopathologic lesions across clusters. Cox proportional hazards models tested associations of clusters with kidney failure and death. Results: We identified three biomarker-derived clusters. The mean estimated glomerular filtration rate was 72.9 ± 28.7, 72.9 ± 33.4 and 39.9 ± 30.4 mL/min/1.73 m Conclusion: Plasma biomarkers may identify clusters of individuals with kidney disease that associate with different clinicopathologic diagnoses, histopathologic lesions and adverse outcomes, and may uncover biomarker candidates and relevant pathways for further study.

Indexed as

biomarkersclusterhistopathologykidney biopsykidney diseaseproteomics

Identifiers

PMID36726432
PMCPMC9871860
OpenAlexW4295226759

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.