Evidence map›Paper›PMID 36725868›Full record

ArticleScientific reports2023

Method for 3D atomic structure determination of multi-element nanoparticles with graphene liquid-cell TEM.

Junyoung Heo, Dongjun Kim, Hyesung Choi, Sungin Kim, Hoje Chun, Cyril F Reboul, Cong T S Van, Dominika Elmlund, Soonmi Choi, Kihyun Kim and 4 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.0field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 4 countries.

Junyoung Heo *School of Chemical and Biological Engineering and Institute of Chemical Processes, Seoul National University, Seoul, 08826, Republic of Korea.
Dongjun Kim *School of Chemical and Biological Engineering and Institute of Chemical Processes, Seoul National University, Seoul, 08826, Republic of Korea.
Hyesung Choi *School of Chemical and Biological Engineering and Institute of Chemical Processes, Seoul National University, Seoul, 08826, Republic of Korea.
Sungin KimSchool of Chemical and Biological Engineering and Institute of Chemical Processes, Seoul National University, Seoul, 08826, Republic of Korea.
Hoje ChunDepartment of Chemical and Biomolecular Engineering, Yonsei University, Seoul, 03722, Republic of Korea.
Cyril F ReboulCenter for Structural Biology, Center for Cancer Research, National Cancer Institute, Frederick, MD, 21702, USA.
Cong T S VanCenter for Structural Biology, Center for Cancer Research, National Cancer Institute, Frederick, MD, 21702, USA.
Dominika ElmlundCenter for Structural Biology, Center for Cancer Research, National Cancer Institute, Frederick, MD, 21702, USA.
Soonmi ChoiSamsung Display Co. LTD., Yongin-si, Gyeonggi-do, 17113, Republic of Korea.
Kihyun KimSamsung Display Co. LTD., Yongin-si, Gyeonggi-do, 17113, Republic of Korea.
Younggil ParkSamsung Display Co. LTD., Yongin-si, Gyeonggi-do, 17113, Republic of Korea.
Hans ElmlundCenter for Structural Biology, Center for Cancer Research, National Cancer Institute, Frederick, MD, 21702, USA. hans.elmlund@nih.gov.
Byungchan HanDepartment of Chemical and Biomolecular Engineering, Yonsei University, Seoul, 03722, Republic of Korea. bchan@yonsei.ac.kr.
Jungwon ParkSchool of Chemical and Biological Engineering and Institute of Chemical Processes, Seoul National University, Seoul, 08826, Republic of Korea. jungwonpark@snu.ac.kr.
Samsung (South Korea) · KRSeoul National University · KRCenter for Cancer Research · USInstitute for Basic Science · KRNational Cancer Institute · USYonsei University · KR

Funding

Algorithms for atomic-resolution structure identification of nanocrystalsZIABC012088 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI ELMLUND, HANS · 2022 to 2025
$3.0M
Institute for Basic Science IBS-R006-D1National Research Foundation of Korea 2013M3A6B1078882National Research Foundation of Korea NRF-2020R1A2C2101871, NRF-2017R1A5A1015365, and NRF-2019M3E6A1064877National Supercomputing Center, Korea Institute of Science and Technology Information KSC-2020-CRE-0310Samsung Research Funding & Incubation Center SRFC-MA2002-03
6 · The paper itself

Abstract

Determining the 3D atomic structures of multi-element nanoparticles in their native liquid environment is crucial to understanding their physicochemical properties. Graphene liquid cell (GLC) TEM offers a platform to directly investigate nanoparticles in their solution phase. Moreover, exploiting high-resolution TEM images of single rotating nanoparticles in GLCs, 3D atomic structures of nanoparticles are reconstructed by a method called "Brownian one-particle reconstruction". We here introduce a 3D atomic structure determination method for multi-element nanoparticle systems. The method, which is based on low-pass filtration and initial 3D model generation customized for different types of multi-element systems, enables reconstruction of high-resolution 3D Coulomb density maps for ordered and disordered multi-element systems and classification of the heteroatom type. Using high-resolution image datasets obtained from TEM simulations of PbSe, CdSe, and FePt nanoparticles that are structurally relaxed with first-principles calculations in the graphene liquid cell, we show that the types and positions of the constituent atoms are precisely determined with root mean square displacement values less than 24 pm. Our study suggests that it is possible to investigate the 3D atomic structures of synthesized multi-element nanoparticles in liquid phase.

Identifiers

PMID36725868
PMCPMC9892495
OpenAlexW4318826207

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.