Evidence map›Paper›PMID 36722350›Full record

ArticleJournal of medical Internet research2023

Automating Quality Assessment of Medical Evidence in Systematic Reviews: Model Development and Validation Study.

Simon Šuster, Timothy Baldwin, Jey Han Lau, Antonio Jimeno Yepes, David Martinez Iraola, Yulia Otmakhova, Karin Verspoor

Abstract read
In one paragraph

Article in Journal of medical Internet research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Simon ŠusterSchool of Computing and Information Systems, University of Melbourne, Melbourne, Australia.ORCID 0000-0002-8817-8545
Timothy BaldwinSchool of Computing and Information Systems, University of Melbourne, Melbourne, Australia.ORCID 0000-0003-4525-6950
Jey Han LauSchool of Computing and Information Systems, University of Melbourne, Melbourne, Australia.ORCID 0000-0002-1647-4628
Antonio Jimeno YepesSchool of Computing and Information Systems, University of Melbourne, Melbourne, Australia.ORCID 0000-0002-6581-094X
David Martinez IraolaDoctor Evidence LLC, Santa Monica, CA, United States.ORCID 0000-0002-8969-9318
Yulia OtmakhovaSchool of Computing and Information Systems, University of Melbourne, Melbourne, Australia.ORCID 0000-0002-6738-3451
Karin VerspoorSchool of Computing Technologies, RMIT University, Melbourne, Australia.ORCID 0000-0002-8661-1544

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAssessment of the quality of medical evidence available on the web is a critical step in the preparation of systematic reviews. Existing tools that automate parts of this task validate the quality of individual studies but not of entire bodies of evidence and focus on a restricted set of quality criteria.

objectiveWe proposed a quality assessment task that provides an overall quality rating for each body of evidence (BoE), as well as finer-grained justification for different quality criteria according to the Grading of Recommendation, Assessment, Development, and Evaluation formalization framework. For this purpose, we constructed a new data set and developed a machine learning baseline system (EvidenceGRADEr).

methodsWe algorithmically extracted quality-related data from all summaries of findings found in the Cochrane Database of Systematic Reviews. Each BoE was defined by a set of population, intervention, comparison, and outcome criteria and assigned a quality grade (high, moderate, low, or very low) together with quality criteria (justification) that influenced that decision. Different statistical data, metadata about the review, and parts of the review text were extracted as support for grading each BoE. After pruning the resulting data set with various quality checks, we used it to train several neural-model variants. The predictions were compared against the labels originally assigned by the authors of the systematic reviews.

resultsOur quality assessment data set, Cochrane Database of Systematic Reviews Quality of Evidence, contains 13,440 instances, or BoEs labeled for quality, originating from 2252 systematic reviews published on the internet from 2002 to 2020. On the basis of a 10-fold cross-validation, the best neural binary classifiers for quality criteria detected risk of bias at 0.78 F

conclusionsDifferent factors affect the quality of evidence in the context of systematic reviews of medical evidence. Some of these (risk of bias and imprecision) can be automated with reasonable accuracy. Other quality dimensions such as indirectness, inconsistency, and publication bias prove more challenging for machine learning, largely because they are much rarer. This technology could substantially reduce reviewer workload in the future and expedite quality assessment as part of evidence synthesis.

Indexed as

Machine LearningBiasHumansSystematic Reviews as Topicautomated quality assessmentbias detectioncritical appraisalevidence synthesissystematic reviews

Identifiers

PMID36722350
PMCPMC10131699

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.