Evidence map›Paper›PMID 36721347›Full record

ArticleProtein science : a publication of the Protein Society2023

AmiP from hyperthermophilic Thermus parvatiensis prophage is a thermoactive and ultrathermostable peptidoglycan lytic amidase.

Andrius Jasilionis, Magdalena Plotka, Lei Wang, Sebastian Dorawa, Joanna Lange, Hildegard Watzlawick, Tom van den Bergh, Bas Vroling, Josef Altenbuchner, Anna-Karina Kaczorowska and 4 more

Open access · hybridAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 5 countries.

Andrius JasilionisDivision of Biotechnology, Department of Chemistry, Lund University, Lund, Sweden.
Magdalena PlotkaLaboratory of Extremophiles Biology, Department of Microbiology, Faculty of Biology, University of Gdansk, Gdansk, Poland.ORCID 0000-0002-2871-8060
Lei WangInstitute of Biomedical Genetics, University of Stuttgart, Stuttgart, Germany.ORCID 0000-0002-7323-8787
Sebastian DorawaLaboratory of Extremophiles Biology, Department of Microbiology, Faculty of Biology, University of Gdansk, Gdansk, Poland.ORCID 0000-0002-8296-2005
Joanna LangeBio-Prodict BV, Nijmegen, The Netherlands.ORCID 0000-0002-8382-1968
Hildegard WatzlawickInstitute of Biomedical Genetics, University of Stuttgart, Stuttgart, Germany.ORCID 0000-0002-1991-8095
Tom van den BerghBio-Prodict BV, Nijmegen, The Netherlands.ORCID 0000-0001-9715-5620
Bas VrolingBio-Prodict BV, Nijmegen, The Netherlands.ORCID 0000-0001-9437-7447
Josef AltenbuchnerInstitute of Biomedical Genetics, University of Stuttgart, Stuttgart, Germany.ORCID 0000-0001-8579-2438
Anna-Karina KaczorowskaCollection of Plasmids and Microorganisms, Faculty of Biology, University of Gdansk, Gdansk, Poland.ORCID 0000-0002-6598-8449
Ehmke PohlDepartment of Biosciences, Durham University, Durham, UK.ORCID 0000-0002-9949-4471
Tadeusz KaczorowskiLaboratory of Extremophiles Biology, Department of Microbiology, Faculty of Biology, University of Gdansk, Gdansk, Poland.ORCID 0000-0002-2305-2677
Eva Nordberg KarlssonDivision of Biotechnology, Department of Chemistry, Lund University, Lund, Sweden.ORCID 0000-0002-8597-7050
Stefanie Freitag-PohlDepartment of Chemistry, Durham University, Durham, UK.ORCID 0000-0002-1423-8103
University of Gdańsk · PLBio-Prodict (Netherlands) · NLUniversity of Stuttgart · DEDurham University · GBLund University · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacteriophages encode a wide variety of cell wall disrupting enzymes that aid the viral escape in the final stages of infection. These lytic enzymes have accumulated notable interest due to their potential as novel antibacterials for infection treatment caused by multiple-drug resistant bacteria. Here, the detailed functional and structural characterization of Thermus parvatiensis prophage peptidoglycan lytic amidase AmiP, a globular Amidase_3 type lytic enzyme adapted to high temperatures is presented. The sequence and structure comparison with homologous lytic amidases reveals the key adaptation traits that ensure the activity and stability of AmiP at high temperatures. The crystal structure determined at a resolution of 1.8 Å displays a compact α/β-fold with multiple secondary structure elements omitted or shortened compared with protein structures of similar proteins. The functional characterization of AmiP demonstrates high efficiency of catalytic activity and broad substrate specificity toward thermophilic and mesophilic bacteria strains containing Orn-type or DAP-type peptidoglycan. The here presented AmiP constitutes the most thermoactive and ultrathermostable Amidase_3 type lytic enzyme biochemically characterized with a temperature optimum at 85°C. The extraordinary high melting temperature T

Indexed as

PeptidoglycanProphagesAmidohydrolasesCatalytic DomainCell WallModels, MolecularN-Acetylmuramoyl-L-alanine AmidaseSodium ChlorideThermusamidaseAmidohydrolasesN-Acetylmuramoyl-L-alanine AmidasePeptidoglycanSodium ChlorideadaptationAmidase_3 catalytic domainpeptidoglycan lytic amidasesthermoactivitythermostabilityThermus prophage

Identifiers

PMID36721347
PMCPMC9929850
OpenAlexW4318755012

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.