Evidence map›Paper›PMID 36718861›Full record

ArticleNucleic acids research2023

SPRTN-dependent DPC degradation precedes repair of damaged DNA: a proof of concept revealed by the STAR assay.

Mateo Glumac, Mirjana Polović, Anja Batel, Andrea Gelemanović, Boris Maček, Ana Velić, Ivana Marinović-Terzić

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Mateo GlumacUniversity of Split School of Medicine, Laboratory for cancer research, Split 21000, Croatia.
Mirjana PolovićUniversity of Split School of Medicine, Laboratory for cancer research, Split 21000, Croatia.
Anja BatelUniversity of Split School of Medicine, Laboratory for cancer research, Split 21000, Croatia.
Andrea GelemanovićMediterranean Institute for Life Sciences (MedILS), Split 21000, Croatia.
Boris MačekQuantitative Proteomics, Interfaculty Institute of Cell Biology, Faculty of Science, University of Tuebingen, Tuebingen 72076, Germany.
Ana VelićQuantitative Proteomics, Interfaculty Institute of Cell Biology, Faculty of Science, University of Tuebingen, Tuebingen 72076, Germany.
Ivana Marinović-TerzićUniversity of Split School of Medicine, Laboratory for cancer research, Split 21000, Croatia.ORCID 0000-0003-1109-4682
University of Split · HRUniversity of Tübingen · DEMediterranean Institute for Life Sciences · HR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

DNA-protein crosslinks (DPCs), formed by the covalent conjugation of proteins to DNA, are toxic lesions that interfere with DNA metabolic processing and transcription. The development of an accurate biochemical assay for DPC isolation is a priority for the mechanistic understanding of their repair. Here, we propose the STAR assay for the direct quantification of DPCs, sensitive to physiologically relevant treatment conditions. Implementing the STAR assay revealed the formation of small cross-linked peptides on DNA, created by the proteolytic degradation of DPCs by SPRTN. The initial proteolytic degradation of DPCs is required for the downstream activation of DNA repair, which is mediated through the phosphorylation of H2Ax. This leads to the accumulation of DNA repair factors on chromatin and the subsequent complete removal of the cross-linked peptides. These results confirmed that the repair of DPCs is a two-step process, starting with proteolytic resection by SPRTN, followed by the repair of the underlying damage to the DNA.

Indexed as

DNA-Binding ProteinsDNA DamageDNADNA RepairPeptide HydrolasesProteolysisDNADNA-Binding ProteinsPeptide Hydrolases

Identifiers

PMID36718861
PMCPMC10085693
OpenAlexW4318667245

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.