Evidence map›Paper›PMID 36718642›Full record

ArticleJournal of cell science2023

Single-chromosome dynamics reveals locus-dependent dynamics and chromosome territory orientation.

Yu-Chieh Chung, Madhoolika Bisht, Jenna Thuma, Li-Chun Tu

Open access · hybridFull text read
In one paragraph

Article in Journal of cell science, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 17 citations in OpenAlex.

  1. A Self-Organized Liquid Reaction Container for Cellular Memory.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  2. Article
  3. Article
  4. Unveiling the invisible genomic dynamics.Experimental & molecular medicine · 2025
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Yu-Chieh ChungDepartment of Biological Chemistry and Pharmacology, The Ohio State University, Columbus, OH 43210, USA.ORCID 0000-0002-9430-8393
Madhoolika BishtDepartment of Biological Chemistry and Pharmacology, The Ohio State University, Columbus, OH 43210, USA.
Jenna ThumaDepartment of Biological Chemistry and Pharmacology, The Ohio State University, Columbus, OH 43210, USA.
Li-Chun TuDepartment of Biological Chemistry and Pharmacology, The Ohio State University, Columbus, OH 43210, USA.ORCID 0000-0002-7421-4007
The Ohio State University · US

Funding

Translational Therapeutics Research Program (TT)P30CA016058 · NCI · OHIO STATE UNIVERSITY · PI Jennifer A. Woyach · 1985 to 2026
$132.3M
Deciphering real-time dynamics of the human genome organization in response to DNA damage and gene expressionR00GM126810 · NIGMS · OHIO STATE UNIVERSITY · PI TU, LI-CHUN · 2019 to 2021
$747k
NCI NIH HHS P30 CA016058NIGMS NIH HHS R00 GM126810NIH HHS R00GM126810
6 · The paper itself

Abstract

Dynamic chromatin organization instantly influences DNA accessibility through modulating local macromolecular density and interactions, driving changes in transcription activities. Chromatin dynamics have been reported to be locally confined but contribute to coherent chromatin motion across the entire nucleus. However, the regulation of dynamics, nuclear orientation and compaction of subregions along a single chromosome are not well-understood. We used CRISPR-based real-time single-particle tracking and polymer models to characterize the dynamics of specific genomic loci and determine compaction levels of large human chromosomal domains. Our studies showed that chromosome compaction changed during interphase and that compactions of two arms on chromosome 19 were different. The dynamics of genomic loci were subdiffusive and dependent on chromosome regions and transcription states. Surprisingly, the correlation between locus-dependent nuclear localization and mobility was negligible. Strong tethering interactions detected at the pericentromeric region implies local condensation or associations with organelles within local nuclear microenvironments, such as chromatin-nuclear body association. Based on our findings, we propose a 'guided radial model' for the nuclear orientation of the long arm of chromosome 19.

Indexed as

Cell NucleusChromatinChromosomes, HumanHumansInterphaseChromatinChromatin dynamicsCRISPRLive-cell imagingSingle-particle tracking

Identifiers

PMID36718642
PMCPMC10022681
OpenAlexW4318611966

What OpenQuestion holds

Textfull text, public
LicenceCC BY
measurements read43
table measurements read1
identifiers read2
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.