Evidence map›Paper›PMID 36718140›Full record

ArticleJTO clinical and research reports2023

Ultrafast Gene Fusion Assessment for Nonsquamous NSCLC.

Véronique Hofman, Simon Heeke, Christophe Bontoux, Lara Chalabreysse, Marc Barritault, Pierre Paul Bringuier, Tanguy Fenouil, Nazim Benzerdjeb, Hugues Begueret, Jean Philippe Merlio and 21 more

Open access · goldAbstract read
In one paragraph

Article in JTO clinical and research reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.7field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 18 citations in OpenAlex.

  1. Review
  2. Article
  3. AccurateInternational journal of molecular sciences · 2025
    Article
  4. Article
  5. Review
  6. Longitudinal Tracking ofJTO clinical and research reports · 2025
    Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. Cost-Efficient Detection ofInternational journal of molecular sciences · 2023
    Article
  12. Article
  13. A narrative review of methods for the identification ofTranslational lung cancer research · 2023
    Review
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

31 authors at 9 institutions in 3 countries.

Véronique HofmanLaboratory of Clinical and Experimental Pathology, Centre Hospitalier Universitaire de Nice, Université Côte d'Azur, Nice, France.
Simon HeekeDepartment of Thoracic/Head & Neck Medical Oncology, the University of Texas, MD Anderson Cancer Center, Houston, Texas.
Christophe BontouxLaboratory of Clinical and Experimental Pathology, Centre Hospitalier Universitaire de Nice, Université Côte d'Azur, Nice, France.
Lara ChalabreysseDepartment of Pathology, Hospices Civils de Lyon, Groupement Hospitalier Est - HCL, Bron, France, University Claude Bernard, Lyon, France.
Marc BarritaultDepartment of Pathology, Molecular Biology of Tumors, Hospices Civils de Lyon, Groupement Hospitalier Est - HCL, Bron, France.
Pierre Paul BringuierDepartment of Pathology, Molecular Biology of Tumors, Hospices Civils de Lyon, Groupement Hospitalier Est - HCL, Bron, France.
Tanguy FenouilDepartment of Pathology, Hospices Civils de Lyon, Groupement Hospitalier Est - HCL, Bron, France, University Claude Bernard, Lyon, France.
Nazim BenzerdjebDepartment of Pathology, Hospices Civils de Lyon, Hôpital Lyon Sud, Pierre-Bénite, France, University Claude Bernard, Lyon, France.
Hugues BegueretDepartment of Pathology, Centre Hospitalier Universitaire Bordeaux, Hôpital Haut-Lévêque, Pessac, France.
Jean Philippe MerlioDepartment of Histology and Molecular Pathology of Tumors, Centre Hospitalier Universitaire Bordeaux, Pessac, France.
Charline CaumontDepartment of Histology and Molecular Pathology of Tumors, Centre Hospitalier Universitaire Bordeaux, Pessac, France.
Nicolas PitonDepartment of Pathology and INSERM U1245, CHU de Rouen, Normandie Université, Rouen, France.
Jean-Christophe SabourinDepartment of Pathology and INSERM U1245, CHU de Rouen, Normandie Université, Rouen, France.
Solène EvrardDepartment of Pathology, IUCT-Oncopole, Toulouse, France.
Charlotte SyrykhDepartment of Pathology, IUCT-Oncopole, Toulouse, France.
Anna VigierDepartment of Pathology, IUCT-Oncopole, Toulouse, France.
Pierre BroussetDepartment of Pathology, IUCT-Oncopole, Toulouse, France.
Julien MazieresDepartment of Pneumology, CHU Toulouse-Hôpital Larrey, Université Paul Sabatier, Toulouse, France.
Elodie Long-MiraLaboratory of Clinical and Experimental Pathology, Centre Hospitalier Universitaire de Nice, Université Côte d'Azur, Nice, France.
Jonathan BenzaquenFHU OncoAge, Hôpital Pasteur, Université Côte d'Azur, Nice, France.
Jacques BoutrosFHU OncoAge, Hôpital Pasteur, Université Côte d'Azur, Nice, France.
Maryline AllegraHospital-Integrated Biobank (BB-0033-00025), Hôpital Pasteur, Nice, France.
Virginie TangaHospital-Integrated Biobank (BB-0033-00025), Hôpital Pasteur, Nice, France.
Virginie Lespinet-FabreLaboratory of Clinical and Experimental Pathology, Centre Hospitalier Universitaire de Nice, Université Côte d'Azur, Nice, France.
Myriam SalahHospital-Integrated Biobank (BB-0033-00025), Hôpital Pasteur, Nice, France.
Christelle BonnetaudHospital-Integrated Biobank (BB-0033-00025), Hôpital Pasteur, Nice, France.
Olivier BordoneLaboratory of Clinical and Experimental Pathology, Centre Hospitalier Universitaire de Nice, Université Côte d'Azur, Nice, France.
Sandra LassalleLaboratory of Clinical and Experimental Pathology, Centre Hospitalier Universitaire de Nice, Université Côte d'Azur, Nice, France.
Charles-Hugo MarquetteFHU OncoAge, Hôpital Pasteur, Université Côte d'Azur, Nice, France.
Marius IliéLaboratory of Clinical and Experimental Pathology, Centre Hospitalier Universitaire de Nice, Université Côte d'Azur, Nice, France.
Paul HofmanLaboratory of Clinical and Experimental Pathology, Centre Hospitalier Universitaire de Nice, Université Côte d'Azur, Nice, France.
Centre National de la Recherche Scientifique · FRHôpital Pasteur · FRInstitut universitaire du cancer de Toulouse Oncopole · FRUniversité Claude Bernard Lyon 1 · FRCentre Hospitalier Universitaire de Bordeaux · FRHospices Civils de Lyon · FRInserm · FRUniversité Côte d'Azur · FRUniversité Toulouse III - Paul Sabatier · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Introduction: Gene fusion testing of Methods: A total of 195 NS-NSCLC cases (113 known gene fusions and 82 wild-type tumors) were included retrospectively. To validate the detection of a Results: The accuracy was 92.3% and 93.1% for Idylla and Genexus, respectively. Both systems improved the sensitivity for detection by including a 5'-3' imbalance analysis. Although detection of Conclusions: UFGFA using NGS and reverse-transcriptase polymerase chain reaction approaches had an equal level of detection of gene fusion but with some technique-specific limitations. Nevertheless, UFGFA detection in routine clinical care is feasible with both systems allowing faster initiation of therapy and a broad degree of screening.

Indexed as

Gene fusionNext generation sequencingNon–small cell lung carcinomaRT-PCR

Identifiers

PMID36718140
PMCPMC9883235
OpenAlexW4313333940

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.