Evidence map›Paper›PMID 36718090›Full record

ArticleBrain : a journal of neurology2023

SPTSSA variants alter sphingolipid synthesis and cause a complex hereditary spastic paraplegia.

Siddharth Srivastava, Hagar Mor Shaked, Kenneth Gable, Sita D Gupta, Xueyang Pan, Niranjanakumari Somashekarappa, Gongshe Han, Payam Mohassel, Marc Gotkine, Elizabeth Doney and 17 more

Registry-linked trialOpen access · hybridAbstract read
In one paragraph

Article in Brain : a journal of neurology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT02450851 (Clinical and Genetic Evaluation of Patients With Undiagnosed Disorders Through the Undiagnosed Diseases Network), which is not on this map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT02450851 recruitingnot on this map

Clinical and Genetic Evaluation of Patients With Undiagnosed Disorders Through the Undiagnosed Diseases Network

TypeobservationalSponsorNational Human Genome Research Institute (NHGRI)Ran2015 to 2028Enrolled20,000ConditionsGenetic Disease
3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Characterization of novel and recurrentJournal of neuromuscular diseases · 2026
    Article
  3. Rigorous genetic diagnosis review in natural history studies.Orphanet journal of rare diseases · 2026
    Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Functional assays inGenome research · 2025
    Review
  12. Review
  13. Human genetic defects of sphingolipid synthesis.Journal of inherited metabolic disease · 2025
    Review
  14. Article
  15. Article
  16. Regulation of cellular and systemic sphingolipid homeostasis.Nature reviews. Molecular cell biology · 2024
    Review
  17. Article
  18. RecurrentJournal of neurology, neurosurgery, and psychiatry · 2024
    Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors at 9 institutions in 2 countries.

Siddharth SrivastavaDepartment of Neurology, Rosamund Stone Zander Translational Neuroscience Center, BostonChildren's Hospital, Harvard Medical School, Boston, MA 02115, USA.ORCID 0000-0001-7008-1879
Hagar Mor ShakedDepartment of Genetics, Hadassah Medical Center and Faculty of Medicine, Hebrew University of Jerusalem, Jerusalem 91120, Israel.
Kenneth GableDepartment of Biochemistry and Molecular Biology, Uniformed Services University of the Health Sciences, Bethesda, MD 20814, USA.
Sita D GuptaDepartment of Biochemistry and Molecular Biology, Uniformed Services University of the Health Sciences, Bethesda, MD 20814, USA.
Xueyang PanDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
Niranjanakumari SomashekarappaDepartment of Biochemistry and Molecular Biology, Uniformed Services University of the Health Sciences, Bethesda, MD 20814, USA.
Gongshe HanDepartment of Biochemistry and Molecular Biology, Uniformed Services University of the Health Sciences, Bethesda, MD 20814, USA.
Payam MohasselNeuromuscular and Neurogenetic Disorders of Childhood Section, National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, MD 20814, USA.
Marc GotkineDepartment of Genetics, Hadassah Medical Center and Faculty of Medicine, Hebrew University of Jerusalem, Jerusalem 91120, Israel.
Elizabeth DoneyMassachusetts Eye and Ear, Boston, MA 02114, USA.
Paula GoldenbergDepartment of Pediatrics, Section on Medical Genetics, Massachusetts General Hospital, Harvard Medical School, Boston, MA 02114, USA.
Queenie K G TanDepartment of Pediatrics, Division of Medical Genetics, Duke University School of Medicine, Durham, NC 27710, USA.
Yi GongDepartment of Neurology, Massachusetts General Hospital, Harvard Medical School, Boston, MA 02114, USA.
Benjamin KleinstiverCenter for Genomic Medicine, Massachusetts General Hospital, Harvard Medical School, Boston, MA 02114, USA.
Brian WishartPhysical Medicine and Rehabilitation, Spaulding Rehabilitation Hospital, Harvard Medical School, Boston, MA 02114, USA.
Heidi CopeDepartment of Pediatrics, Division of Medical Genetics, Duke University School of Medicine, Durham, NC 27710, USA.
Claudia Brito PiresDepartment of Neurology, Massachusetts General Hospital, Harvard Medical School, Boston, MA 02114, USA.
Hannah StutzmanCenter for Genomic Medicine, Massachusetts General Hospital, Harvard Medical School, Boston, MA 02114, USA.
Rebecca C SpillmannDepartment of Pediatrics, Division of Medical Genetics, Duke University School of Medicine, Durham, NC 27710, USA.
Undiagnosed Disease Network
Reza SadjadiDepartment of Neurology, Massachusetts General Hospital, Harvard Medical School, Boston, MA 02114, USA.
Orly ElpelegDepartment of Genetics, Hadassah Medical Center and Faculty of Medicine, Hebrew University of Jerusalem, Jerusalem 91120, Israel.
Chia-Hsueh LeeDepartment of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.
Hugo J BellenDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
Simon EdvardsonPediatric Neurology Unit, Hadassah University Hospital, Mount Scopus, Jerusalem 91240, Israel.
Florian EichlerDepartment of Neurology, Massachusetts General Hospital, Harvard Medical School, Boston, MA 02114, USA.ORCID 0000-0001-6836-1089
Teresa M DunnDepartment of Biochemistry and Molecular Biology, Uniformed Services University of the Health Sciences, Bethesda, MD 20814, USA.ORCID 0000-0003-3829-6030
Harvard University · USDuke University · USUniformed Services University of the Health Sciences · USMassachusetts Eye and Ear Infirmary · USSt. Jude Children's Research Hospital · USBaylor College of Medicine · USBoston Children's Hospital · USHebrew University of Jerusalem · ILNational Institutes of Health · US

Funding

Validation of the GMFC-MLDU54NS115052 · NINDS · CHILDREN'S HOSP OF PHILADELPHIA · PI Laura Ann Adang, FLORIAN S EICHLER · 2019 to 2026
$14.3M
An integrated and diverse genomic medicine program for undiagnosed diseasesU01HG007672 · NHGRI · DUKE UNIVERSITY · PI SHASHI, VANDANA · 2014 to 2022
$13.4M
Genetic Analysis and Manipulation Core (GAEC)P50HD105351 · NICHD · BOSTON CHILDREN'S HOSPITAL · PI SCOTT Loren POMEROY, MUSTAFA SAHIN · 2021 to 2026
$9.4M
Zebrafish CoreU54NS093793 · NINDS · BAYLOR COLLEGE OF MEDICINE · PI BELLEN, HUGO J · 2015 to 2022
$7.5M
Expansion and characterization of the Drosophila Toolkit to study SARS-CoV-2R24OD022005 · OD · BAYLOR COLLEGE OF MEDICINE · PI BELLEN, HUGO J · 2016 to 2023
$7.4M
Structural and Functional Studies of Human Serine Palmitoyltransferase ComplexesR01GM143282 · NIGMS · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI LEE, CHIA-HSUEH · 2021 to 2025
$1.8M
Investigating the Genetic Landscape of Cerebral PalsyK23NS119666 · NINDS · BOSTON CHILDREN'S HOSPITAL · PI SRIVASTAVA, SIDDHARTH · 2021 to 2025
$1.1M
The role of TGF beta pathway dysregulation in pathogenesis of collagen VI-related muscular dystrophyK22NS104135 · NINDS · JOHNS HOPKINS UNIVERSITY · PI MOHASSEL, PAYAM · 2022 to 2024
$666k
NHGRI NIH HHS U01 HG007672NICHD NIH HHS P50 HD105351NIGMS NIH HHS R01 GM143282NIH HHS R24 OD022005NINDS NIH HHS K22 NS104135NINDS NIH HHS K23 NS119666NINDS NIH HHS U54 NS093793NINDS NIH HHS U54 NS115052
6 · The paper itself

Abstract

Sphingolipids are a diverse family of lipids with critical structural and signalling functions in the mammalian nervous system, where they are abundant in myelin membranes. Serine palmitoyltransferase, the enzyme that catalyses the rate-limiting reaction of sphingolipid synthesis, is composed of multiple subunits including an activating subunit, SPTSSA. Sphingolipids are both essential and cytotoxic and their synthesis must therefore be tightly regulated. Key to the homeostatic regulation are the ORMDL proteins that are bound to serine palmitoyltransferase and mediate feedback inhibition of enzymatic activity when sphingolipid levels become excessive. Exome sequencing identified potential disease-causing variants in SPTSSA in three children presenting with a complex form of hereditary spastic paraplegia. The effect of these variants on the catalytic activity and homeostatic regulation of serine palmitoyltransferase was investigated in human embryonic kidney cells, patient fibroblasts and Drosophila. Our results showed that two different pathogenic variants in SPTSSA caused a hereditary spastic paraplegia resulting in progressive motor disturbance with variable sensorineural hearing loss and language/cognitive dysfunction in three individuals. The variants in SPTSSA impaired the negative regulation of serine palmitoyltransferase by ORMDLs leading to excessive sphingolipid synthesis based on biochemical studies and in vivo studies in Drosophila. These findings support the pathogenicity of the SPTSSA variants and point to excessive sphingolipid synthesis due to impaired homeostatic regulation of serine palmitoyltransferase as responsible for defects in early brain development and function.

Indexed as

Spastic Paraplegia, HereditaryAnimalsCell MembraneChildHumansMammalsSerine C-PalmitoyltransferaseSphingolipidsSerine C-PalmitoyltransferaseSphingolipidshereditary spastic paraplegiaORMDLsserine palmitoyltransferasesphingolipidsSPTSSA

Identifiers

PMID36718090
PMCPMC10319774
OpenAlexW4318668410

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.