Evidence map›Paper›PMID 36717722›Full record

ArticleNature immunology2023

Enhancer-instructed epigenetic landscape and chromatin compartmentalization dictate a primary antibody repertoire protective against specific bacterial pathogens.

E Mauricio Barajas-Mora, Lindsay Lee, Hanbin Lu, J Andrés Valderrama, Elisabet Bjanes, Victor Nizet, Ann J Feeney, Ming Hu, Cornelis Murre

Open access · bronzeAbstract read
In one paragraph

Article in Nature immunology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 1 pooled it
4.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 1 synthesis or guideline pooled it, 28 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. mCancer cell international · 2025
    Article
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  12. mJournal of hepatocellular carcinoma · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

E Mauricio Barajas-MoraDepartment of Molecular Biology, University of California, San Diego, La Jolla, CA, USA.ORCID http://orcid.org/0000-0002-7191-2213
Lindsay LeeDepartment of Quantitative Health Sciences, Lerner Research Institute, Cleveland Clinic Foundation, Cleveland, OH, USA.
Hanbin LuDepartment of Molecular Biology, University of California, San Diego, La Jolla, CA, USA.
J Andrés ValderramaDepartment of Pediatrics, University of California, San Diego, La Jolla, CA, USA.
Elisabet BjanesDepartment of Pediatrics, University of California, San Diego, La Jolla, CA, USA.ORCID http://orcid.org/0000-0002-2747-7699
Victor NizetDepartment of Pediatrics, University of California, San Diego, La Jolla, CA, USA.ORCID http://orcid.org/0000-0003-3847-0422
Ann J FeeneyDepartment of Immunology and Microbiology, Scripps Research, La Jolla, CA, USA.
Ming HuDepartment of Quantitative Health Sciences, Lerner Research Institute, Cleveland Clinic Foundation, Cleveland, OH, USA. hum@ccf.org.ORCID http://orcid.org/0000-0003-0987-2916
Cornelis MurreDepartment of Molecular Biology, University of California, San Diego, La Jolla, CA, USA. cmurre@ucsd.edu.ORCID http://orcid.org/0000-0003-2437-507X
University of California San Diego · USCleveland Clinic · USScripps Institution of Oceanography · US

Funding

VIRAL MALIGNANCYP30CA023100 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Jesse Nodora · 1985 to 2026
$124.9M
T follicular helper (Tfh) CD4+ T cell, germinal center, and antibody response dysfunction in human recurrent tonsillitisU19AI142742 · NIAID · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI Alessandro Sette · 2019 to 2026
$32.8M
The role of TCR, ligand, and signal strength in human γδ T cell developmentP01AI102853 · NIAID · RESEARCH INST OF FOX CHASE CAN CTR · PI Maria Ciofani · 2014 to 2026
$26.3M
The 3D-Structures of the Immunoglobulin Heavy Chain LocusR01AI082850 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI MURRE, CORNELIS · 2009 to 2024
$5.4M
The 3D-Structures of the Pre-Pro-B and Pro-B Cell GenomesR01AI100880 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI MURRE, CORNELIS · 2012 to 2022
$4.1M
Model-based methods for single cell chromatin interactomic dataR35HG011922 · NHGRI · CLEVELAND CLINIC LERNER COM-CWRU · PI HU, MING · 2021 to 2025
$2.4M
Molecular Pathways to T-Lineage CommitmentR01AI062770 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI MURRE, CORNELIS · 2005 to 2009
$1.8M
Recognition Of The Dendritic Cell Surface Receptor Dc-sign By HIV Gp120Z01AI000880 · NIAID · NIAID EXTRAMURAL ACTIVITIES · PI SUN, PETER D. · 2001 to 2008
$959k
Intramural NIH HHS Z01 AI000880NCI NIH HHS P30 CA023100NHGRI NIH HHS R35 HG011922NIAID NIH HHS P01 AI102853NIAID NIH HHS R01 AI062770NIAID NIH HHS R01 AI082850NIAID NIH HHS R01 AI100880NIAID NIH HHS U19 AI142742
6 · The paper itself

Abstract

Antigen receptor loci are organized into variable (V), diversity (D) and joining (J) gene segments that rearrange to generate antigen receptor repertoires. Here, we identified an enhancer (E34) in the murine immunoglobulin kappa (Igk) locus that instructed rearrangement of V

Indexed as

ChromatinMethicillin-Resistant Staphylococcus aureusAnimalsB-LymphocytesEpigenesis, GeneticImmunoglobulin kappa-ChainsImmunoglobulin Variable RegionMiceChromatinImmunoglobulin kappa-ChainsImmunoglobulin Variable Region

Identifiers

PMID36717722
PMCPMC10917333
OpenAlexW4318486639

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.