Evidence map›Paper›PMID 36717627›Full record

ArticleNature cell biology2023

Dissection of gastric homeostasis in vivo facilitates permanent capture of isthmus-like stem cells in vitro.

Aaron J Huebner, Rebecca A Gorelov, Ruslan Deviatiiarov, Samuel Demharter, Tobias Kull, Ryan M Walsh, Marty S Taylor, Simon Steiger, John T Mullen, Peter V Kharchenko and 1 more

Abstract read
In one paragraph

Article in Nature cell biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed, 1 pooled it
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 1 synthesis or guideline pooled it, 18 citations in OpenAlex.

  1. Pooled it
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  5. Review
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  13. A Panoramic View of Cell Population Dynamics in Mammalian Aging.bioRxiv : the preprint server for biology · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Aaron J HuebnerMassachusetts General Hospital Department of Molecular Biology, Boston, MA, USA.
Rebecca A GorelovMassachusetts General Hospital Department of Molecular Biology, Boston, MA, USA.
Ruslan DeviatiiarovInstitute of Fundamental Medicine and Biology, Kazan Feberal University, Kazan, Russia.
Samuel DemharterDepartment of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.
Tobias KullMassachusetts General Hospital Department of Molecular Biology, Boston, MA, USA.
Ryan M WalshMassachusetts General Hospital Department of Molecular Biology, Boston, MA, USA.
Marty S TaylorDepartment of Pathology, Massachusetts General Hospital, Boston, MA, USA.ORCID http://orcid.org/0000-0001-5824-142X
Simon SteigerDepartment of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0002-4845-5042
John T MullenDepartment of Surgery, Massachusetts General Hospital, Boston, MA, USA.
Peter V KharchenkoHarvard Stem Cell Institute, Harvard University, Cambridge, MA, USA. Peter.Kharchenko@post.harvard.edu.ORCID http://orcid.org/0000-0002-6036-5875
Konrad HochedlingerMassachusetts General Hospital Department of Molecular Biology, Boston, MA, USA. hochedlinger@molbio.mgh.harvard.edu.ORCID http://orcid.org/0000-0001-5811-5386
Harvard University · USMassachusetts General Hospital · USFleet Science Center · USKazan Federal University · RU

Funding

Transcription Factor Induced ReprogrammingR01HD058013 · NICHD · MASSACHUSETTS GENERAL HOSPITAL · PI HOCHEDLINGER, KONRAD · 2010 to 2019
$4.4M
Role of Sox2 in stomach development, regeneration and cancerR01DK096034 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI HOCHEDLINGER, KONRAD · 2012 to 2015
$1.4M
Elucidating structural, mechanistic, and allosteric determinants of mTOR Complex 2 (mTORC2) signaling.K08DK129824 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI TAYLOR, MARTIN S · 2021 to 2025
$853k
Dissecting the molecular and functional role of Sox2 in synovial sarcomaR21CA194521 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI HOCHEDLINGER, KONRAD · 2016 to 2017
$373k
NCI NIH HHS R21 CA194521NICHD NIH HHS R01 HD058013NIDDK NIH HHS K08 DK129824NIDDK NIH HHS R01 DK096034
6 · The paper itself

Abstract

The glandular stomach is composed of two regenerative compartments termed corpus and antrum, and our understanding of the transcriptional networks that maintain these tissues is incomplete. Here we show that cell types with equivalent functional roles in the corpus and antrum share similar transcriptional states including the poorly characterized stem cells of the isthmus region. To further study the isthmus, we developed a monolayer two-dimensional (2D) culture system that is continually maintained by Wnt-responsive isthmus-like cells capable of differentiating into several gastric cell types. Importantly, 2D cultures can be converted into conventional three-dimensional organoids, modelling the plasticity of gastric epithelial cells in vivo. Finally, we utilized the 2D culture system to show that Sox2 is both necessary and sufficient to generate enterochromaffin cells. Together, our data provide important insights into gastric homeostasis, establish a tractable culture system to capture isthmus cells and uncover a role for Sox2 in enterochromaffin cells.

Indexed as

Gastric MucosaStomachCell DifferentiationHomeostasisStem Cells

Identifiers

PMID36717627
PMCPMC13528691
OpenAlexW4318618508

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.