Evidence map›Paper›PMID 36717564›Full record

ArticleNature communications2023

Mechanism of regulation of the Helicobacter pylori Cagβ ATPase by CagZ.

Xiuling Wu, Yanhe Zhao, Hong Zhang, Wendi Yang, Jinbo Yang, Lifang Sun, Meiqin Jiang, Qin Wang, Qianchao Wang, Xianren Ye and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Xiuling Wu *Provincial University Key Laboratory of Cellular Stress Response and Metabolic Regulation, Fujian Key Laboratory of Developmental and Neural Biology, Key Laboratory of Optoelectronic Science and Technology for Medicine of Ministry of Education, College of Life Sciences, Fujian Normal University, Fuzhou, 350117, Fujian, China.
Yanhe Zhao *Department of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.
Hong ZhangProvincial University Key Laboratory of Cellular Stress Response and Metabolic Regulation, Fujian Key Laboratory of Developmental and Neural Biology, Key Laboratory of Optoelectronic Science and Technology for Medicine of Ministry of Education, College of Life Sciences, Fujian Normal University, Fuzhou, 350117, Fujian, China.
Wendi YangProvincial University Key Laboratory of Cellular Stress Response and Metabolic Regulation, Fujian Key Laboratory of Developmental and Neural Biology, Key Laboratory of Optoelectronic Science and Technology for Medicine of Ministry of Education, College of Life Sciences, Fujian Normal University, Fuzhou, 350117, Fujian, China.
Jinbo YangProvincial University Key Laboratory of Cellular Stress Response and Metabolic Regulation, Fujian Key Laboratory of Developmental and Neural Biology, Key Laboratory of Optoelectronic Science and Technology for Medicine of Ministry of Education, College of Life Sciences, Fujian Normal University, Fuzhou, 350117, Fujian, China.
Lifang SunProvincial University Key Laboratory of Cellular Stress Response and Metabolic Regulation, Fujian Key Laboratory of Developmental and Neural Biology, Key Laboratory of Optoelectronic Science and Technology for Medicine of Ministry of Education, College of Life Sciences, Fujian Normal University, Fuzhou, 350117, Fujian, China.
Meiqin JiangProvincial University Key Laboratory of Cellular Stress Response and Metabolic Regulation, Fujian Key Laboratory of Developmental and Neural Biology, Key Laboratory of Optoelectronic Science and Technology for Medicine of Ministry of Education, College of Life Sciences, Fujian Normal University, Fuzhou, 350117, Fujian, China.
Qin WangDepartment of Biochemistry and Molecular Biology, Binzhou Medical University, Yantai, 264003, Shandong, China.
Qianchao WangProvincial University Key Laboratory of Cellular Stress Response and Metabolic Regulation, Fujian Key Laboratory of Developmental and Neural Biology, Key Laboratory of Optoelectronic Science and Technology for Medicine of Ministry of Education, College of Life Sciences, Fujian Normal University, Fuzhou, 350117, Fujian, China.
Xianren YeFujian Cancer Hospital & Fujian Medical University Cancer Hospital, Fuzhou, 350014, Fujian, China.
Xuewu ZhangDepartment of Pharmacology, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA. xuewu.zhang@utsouthwestern.edu.ORCID 0000-0002-3634-6711
Yunkun WuProvincial University Key Laboratory of Cellular Stress Response and Metabolic Regulation, Fujian Key Laboratory of Developmental and Neural Biology, Key Laboratory of Optoelectronic Science and Technology for Medicine of Ministry of Education, College of Life Sciences, Fujian Normal University, Fuzhou, 350117, Fujian, China. wuyk@fjnu.edu.cn.ORCID 0000-0002-4990-5623
Fujian Normal University · CNFujian Medical University · CNSouthwestern Medical Center · USThe University of Texas Southwestern Medical Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The transport of the CagA effector into gastric epithelial cells by the Cag Type IV secretion system (Cag T4SS) of Helicobacter pylori (H. pylori) is critical for pathogenesis. CagA is recruited to Cag T4SS by the Cagβ ATPase. CagZ, a unique protein in H. pylori, regulates Cagβ-mediated CagA transport, but the underlying mechanisms remain unclear. Here we report the crystal structure of the cytosolic region of Cagβ, showing a typical ring-like hexameric assembly. The central channel of the ring is narrow, suggesting that CagA must unfold for transport through the channel. Our structure of CagZ in complex with the all-alpha domain (AAD) of Cagβ shows that CagZ adopts an overall U-shape and tightly embraces Cagβ. This binding mode of CagZ is incompatible with the formation of the Cagβ hexamer essential for the ATPase activity. CagZ therefore inhibits Cagβ by trapping it in the monomeric state. Based on these findings, we propose a refined model for the transport of CagA by Cagβ.

Indexed as

Adenosine TriphosphatasesBacterial ProteinsHelicobacter pyloriAntigens, BacterialType IV Secretion SystemsAdenosine TriphosphatasesAntigens, BacterialBacterial ProteinsType IV Secretion Systems

Identifiers

PMID36717564
PMCPMC9886983
OpenAlexW4318473684

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.