Evidence map›Paper›PMID 36717023›Full record

ArticleVirus research2023

Characterization, genome analysis and antibiofilm efficacy of lytic Proteus phages RP6 and RP7 isolated from university hospital sewage.

Sahd Ali, Abdulkerim Karaynir, Hanife Salih, Serkan Öncü, Bülent Bozdoğan

Open access · goldAbstract read
In one paragraph

Article in Virus research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
7.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 31 citations in OpenAlex.

  1. Isolation and characterization of two phages infectingThe Journal of general virology · 2026
    Article
  2. Article
  3. Review
  4. Unusual case ofFrontiers in cellular and infection microbiology · 2026
    Review
  5. Application of three-dimensional bacteriophage cocktail biogel on infected burn wounds in rats.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2025
    Article
  6. Review
  7. Article
  8. Review
  9. Zoonotic Risks ofMicroorganisms · 2025
    Review
  10. Review
  11. The Ability of Bacteriophages to Reduce Biofilms Produced byAntibiotics (Basel, Switzerland) · 2025
    Article
  12. Article
  13. Isolation and Characterization of a NovelAntibiotics (Basel, Switzerland) · 2024
    Article
  14. Article
  15. Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Sahd AliRecombinant DNA and Recombinant Protein Center (REDPROM), Aydın Adnan Menderes University, Turkiye. Electronic address: sahdali24@gmail.com.
Abdulkerim KaraynirRecombinant DNA and Recombinant Protein Center (REDPROM), Aydın Adnan Menderes University, Turkiye.
Hanife SalihRecombinant DNA and Recombinant Protein Center (REDPROM), Aydın Adnan Menderes University, Turkiye.
Serkan ÖncüMedical Faculty, Department of Infectious Diseases and Clinical Microbiology, Aydin Adnan Menderes University, Turkiye.
Bülent BozdoğanRecombinant DNA and Recombinant Protein Center (REDPROM), Aydın Adnan Menderes University, Turkiye; Medical Faculty, Department of Medical Microbiology, Aydın Adnan Menderes University, Turkiye.
Adnan Menderes University · TR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The crystalline formation of biofilms by Proteus blocks the urine flow which often complicates the health care of catheterized patients. Bacteriophages has been highlighted as a promising tool to control biofilm-mediated bacterial infections. Here, we isolated and characterized two newly isolated lytic phages capable of infecting clinical isolates of P. mirabilis and P. vulgaris. Moreover, insights regarding the biological and molecular characterization were analysed. Both RP6 and RP7 phages showed a Proteus-genus-specific profile, administering no lytic activity against other family of Enterobacteriaceae. The optimal MOI value of the RP6 and RP7 phages were determined as 0.1 and 0.01, respectively. The one-step growth curve showed that RP6 and RP7 phages have a short latent period of 20 min and large burst size of 220-371 PFU/ML per infected host cell. Bacteria growth was reduced immediately after the phages were added, which is shown by the optical density (OD) measurement after 24 hr. Proteus phage RP6 and RP7 were found to eradicate both the planktonic and mature biofilms produced by the Proteus isolates tested. Genome sequence of Proteus phage RP6 was found to be 58,619 bp, and a G-C content of 47%. Also, Proteus phage RP7 genome size was 103,593 bp with G-C ratio of 38.45%. A total of 70 and 172 open reading frame (ORF) was encoded in RP6 and RP7 phage genomes, respectively. Interestingly, there were no tRNA encoded by Proteus phage RP6 genome even though there is a significant G-C content difference between the phage and its host. Additionally, the exhibition of highly lytic activity and absence of virulence and antibiotic-resistant genes in both Proteus RP6 and RP7 phages emphasized that this newly isolated phages are promising for potential therapeutic phages.

Indexed as

BacteriophagesBiofilmsGenome, ViralHospitalsHumansProteusProteus mirabilisSewageSewageBacteriophageBiofilmBiological characteristicsPhage genomeProteus

Identifiers

PMID36717023
PMCPMC10194311
OpenAlexW4318317890

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.