Evidence map›Paper›PMID 36715962›Full record

ArticleBiochemical genetics2023

Title: Bioinformatic Identification of Genes Involved in Diabetic Nephropathy Fibrosis and their Clinical Relevance.

Yu Bai, Lili Ma, Dai Deng, Dongli Tian, Wenhu Liu, Zongli Diao

Abstract read
PubMed Publisher
In one paragraph

Article in Biochemical genetics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Yu BaiDepartment of Nephrology, Beijing Friendship Hospital, Capital Medical University, Beijing, 10050, China.ORCID http://orcid.org/0000-0003-1133-392X
Lili MaDepartment of Nephrology, Beijing Friendship Hospital, Capital Medical University, Beijing, 10050, China.ORCID http://orcid.org/0000-0003-2493-8741
Dai DengDepartment of Nephrology, Beijing Friendship Hospital, Capital Medical University, Beijing, 10050, China.ORCID http://orcid.org/0000-0002-0848-9520
Dongli TianDepartment of Nephrology, Beijing Friendship Hospital, Capital Medical University, Beijing, 10050, China.ORCID http://orcid.org/0000-0003-3074-0088
Wenhu LiuDepartment of Nephrology, Beijing Friendship Hospital, Capital Medical University, Beijing, 10050, China. wenhuliu@mail.ccmu.edu.cn.ORCID http://orcid.org/0000-0002-6532-4394
Zongli DiaoDepartment of Nephrology, Beijing Friendship Hospital, Capital Medical University, Beijing, 10050, China. diaozl@ccmu.edu.cn.ORCID http://orcid.org/0000-0002-5019-9009
Capital Medical University · CN

Funding

Beijing Municipal Administration of Hospitals Incubating Program PX2022003Wu Jieping Medical Foundation 32067502021-11-26
6 · The paper itself

Abstract

Tubulointerstitial fibrosis is an important pathological feature of diabetic nephropathy that is associated with impaired renal function. However, the mechanism by which fibrosis occurs in diabetic nephropathy is unclear. Differentially expressed genes were identified from transcriptome profiles of renal tissue from diabetic patients and unilateral ureteral obstruction mice and intersected to obtain genes that may be involved in diabetic fibrosis. Biological function analysis and protein-protein interaction network analysis were performed. ROC curve and Pearson correlation analysis between hub genes were performed and glomerular filtration rate estimated. Finally, the RNA levels of hub genes were measured using real-time PCR. A total of 283 genes were identified as potentially involved in diabetic nephropathy fibrosis. TYROBP, CTSS, LCP2, LUM and TLR7 were identified as aberrantly expressed hub genes. Immune cell infiltration analysis demonstrated higher numbers of cytotoxic lymphocytes, B lineage cells, monocyte lineage cells, myeloid dendritic cells, neutrophils, and fibroblasts in the diabetic nephropathy group. The areas under ROC curves for TYROBP, CTSS, LCP2, LUM and TLR7 were 0.9167, 0.9583, 0.9917, 0.93333, and 0.9583, respectively (P < 0.001), and their correlation coefficients with estimated glomerular filtration rate were - 0.8332, - 0.752, - 0.7875, - 0.7567, and - 0.7136, respectively (P < 0.001). The RNA levels of TYROBP, CTSS, LUM and TLR7 were upregulated in high-glucose-treated human renal tubular epithelial cells (P < 0.005). Our study identified TYROBP, CTSS, LCP2, LUM and TLR7 as potentially involved in diabetic nephropathy fibrosis. Furthermore, TYROBP, CTSS, LUM and TLR7 may be associated with epithelial-mesenchymal transition of tubular epithelial cells.

Indexed as

Diabetes Mellitus, ExperimentalDiabetic NephropathiesAnimalsClinical RelevanceFibrosisHumansMiceRNAToll-Like Receptor 7RNAToll-Like Receptor 7Bioinformatic analysisDiabetic nephropathiesImmune cell infiltrationTubulointerstitial fibrosis

Identifiers

PMID36715962
OpenAlexW4318477860

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.