Evidence map›Paper›PMID 36715862›Full record

ArticleAMB Express2023

Draft genome of Raoultella planticola, a high lead resistance bacterium from industrial wastewater.

Nagwa I Elarabi, Asmaa A Halema, Abdelhadi A Abdelhadi, Ahmed R Henawy, Omar Samir, Heba A R Abdelhaleem

Open access · goldAbstract read
In one paragraph

Article in AMB Express, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 21 citations in OpenAlex.

  1. Review
  2. Article
  3. Unraveling the resistance mechanism forMicrobiology spectrum · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. Comparative genomic characterization ofFrontiers in microbiology · 2024
    Article
  12. Article
  13. Article
  14. Draft genome analysis forFrontiers in bioengineering and biotechnology · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Nagwa I ElarabiGenetics Department; Faculty of Agriculture, Cairo University, Giza, 12613, Egypt. nagwa.abdulfattah@agr.cu.edu.eg.ORCID http://orcid.org/0000-0003-1113-3581
Asmaa A HalemaGenetics Department; Faculty of Agriculture, Cairo University, Giza, 12613, Egypt.
Abdelhadi A AbdelhadiGenetics Department; Faculty of Agriculture, Cairo University, Giza, 12613, Egypt.
Ahmed R HenawyDepartment of Microbiology; Faculty of Agriculture, Cairo University, Giza, 12613, Egypt.
Omar SamirGenomic Research Program, Children's Cancer Hospital, Cairo, Egypt.
Heba A R AbdelhaleemBiotechnology College, Misr University for Science and Technology (MUST), 6(th) October City, Egypt.
Cairo University · EGChildren Cancer Hospital · EGMisr University for Science and Technology · EG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Isolation of heavy metals-resistant bacteria from their original habitat is a crucial step in bioremediation. Six lead (Pb) resistant bacterial strains were isolated and identified utilizing 16S rRNA to be Enterobacter ludwigii FACU 4, Shigella flexneri FACU, Microbacterium paraoxydans FACU, Klebsiella pneumoniae subsp. pneumonia FACU, Raoultella planticola FACU 3 and Staphylococcus xylosus FACU. It was determined that all these strains had their Minimum inhibitory concentration (MIC) to be 2500 ppm except R. planticola FACU 3 has a higher maximum tolerance concentration (MTC) up to 2700 ppm. We evaluated the survival of all six strains on lead stress, the efficiency of biosorption and lead uptake. It was found that R. planticola FACU 3 is the highest MTC and S. xylosus FACU was the lowest MTC in this evaluation. Therefore, transmission electron microscopy (TEM) confirmed the difference between the morphological responses of these two strains to lead stress. These findings led to explore more about the genome of R. planticola FACU 3 using illumine Miseq technology. Draft genome sequence analysis revealed the genome size of 5,648,460 bp and G + C content 55.8% and identified 5526 CDS, 75 tRNA and 4 rRNA. Sequencing technology facilitated the identification of about 47 genes related to resistance to many heavy metals including lead, arsenic, zinc, mercury, nickel, silver and chromium of R. planticola FACU 3 strain. Moreover, genome sequencing identified plant growth-promoting genes (PGPGs) including indole acetic acid (IAA) production, phosphate solubilization, phenazine production, trehalose metabolism and 4-hydroxybenzoate production genes and a lot of antibiotic-resistant genes.

Indexed as

BioremediationIllumina MiseqLead resistant bacteriaRaoultella planticolaWhole-genome sequencing

Identifiers

PMID36715862
PMCPMC9885416
OpenAlexW4318478439

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.