Evidence map›Paper›PMID 36715544›Full record

ArticleCancer discovery2023

LKB1-Dependent Regulation of TPI1 Creates a Divergent Metabolic Liability between Human and Mouse Lung Adenocarcinoma.

Benjamin D Stein, John R Ferrarone, Eric E Gardner, Jae Won Chang, David Wu, Pablo E Hollstein, Roger J Liang, Min Yuan, Qiuying Chen, John S Coukos and 9 more

Open access · hybridAbstract read
In one paragraph

Article in Cancer discovery, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed, 1 pooled it
5.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 1 synthesis or guideline pooled it, 35 citations in OpenAlex.

  1. Pooled it
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  3. Article
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  7. Article
  8. Review
  9. Glucose and Lactate, Starters or Intermediates of Cancer Metabolic Rewiring.Advances in experimental medicine and biology · 2026
    Review
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  11. Article
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  19. Genome-wide CRISPR screens in spheroid culture reveal that the tumor suppressor LKB1 inhibits growth via the PIKFYVE lipid kinase.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 5 institutions in 1 country.

Benjamin D Stein *Sandra and Edward Meyer Cancer Center, Department of Medicine, Weill Cornell Medicine, New York, New York.ORCID 0000-0003-1187-1779
John R Ferrarone *Sandra and Edward Meyer Cancer Center, Department of Medicine, Weill Cornell Medicine, New York, New York.ORCID 0000-0002-2718-3009
Eric E GardnerSandra and Edward Meyer Cancer Center, Department of Medicine, Weill Cornell Medicine, New York, New York.ORCID 0000-0002-1552-2675
Jae Won ChangDepartment of Chemistry, University of Chicago, Chicago, Illinois.ORCID 0000-0003-2397-2497
David WuSandra and Edward Meyer Cancer Center, Department of Medicine, Weill Cornell Medicine, New York, New York.ORCID 0000-0003-4513-2739
Pablo E HollsteinMolecular and Cell Biology Laboratory, Salk Institute for Biological Studies, La Jolla, California.ORCID 0000-0002-7323-505X
Roger J LiangSandra and Edward Meyer Cancer Center, Department of Medicine, Weill Cornell Medicine, New York, New York.ORCID 0000-0002-3950-9520
Min YuanMass Spectrometry Core, Beth Israel Deaconess Medical Center, Boston, Massachusetts.ORCID 0000-0002-2178-5017
Qiuying ChenDepartment of Pharmacology, Weill Cornell Medicine, New York, New York.ORCID 0000-0001-5909-3959
John S CoukosDepartment of Chemistry, University of Chicago, Chicago, Illinois.ORCID 0000-0001-7860-7847
Miriam SindelarDepartment of Pharmacology, Weill Cornell Medicine, New York, New York.ORCID 0000-0002-1700-6551
Bryan NgoSandra and Edward Meyer Cancer Center, Department of Medicine, Weill Cornell Medicine, New York, New York.ORCID 0000-0002-7733-2658
Steven S GrossDepartment of Pharmacology, Weill Cornell Medicine, New York, New York.ORCID 0000-0001-8029-2338
Reuben J ShawMolecular and Cell Biology Laboratory, Salk Institute for Biological Studies, La Jolla, California.ORCID 0000-0002-1555-8977
Chen ZhangDepartment of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, New York.ORCID 0000-0003-0205-0928
John M AsaraMass Spectrometry Core, Beth Israel Deaconess Medical Center, Boston, Massachusetts.ORCID 0000-0001-7450-2589
Raymond E MoelleringDepartment of Chemistry, University of Chicago, Chicago, Illinois.ORCID 0000-0002-2043-7838
Harold VarmusSandra and Edward Meyer Cancer Center, Department of Medicine, Weill Cornell Medicine, New York, New York.ORCID 0000-0002-6444-1943
Lewis C CantleySandra and Edward Meyer Cancer Center, Department of Medicine, Weill Cornell Medicine, New York, New York.ORCID 0000-0002-1298-7653
Cornell University · USUniversity of Chicago · USBeth Israel Deaconess Medical Center · USSalk Institute for Biological Studies · USHarvard University · US

Funding

Viral Vector Core (VVC)P30CA014195 · NCI · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI Reuben Shaw · 1985 to 2026
$82.8M
Tuberous Sclerosis-Pathway and PathogenesisP01CA120964 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI David J. Kwiatkowski · 2007 to 2026
$35.9M
MEDICAL SCIENTIST TRAININGT32GM007281 · NIGMS · UNIVERSITY OF CHICAGO · PI CLARK, MARCUS RAMSAY · 1985 to 2022
$32.1M
Decoding And Targeting The LKB1-AMPK Signaling Pathway In CancerR35CA220538 · NCI · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI Reuben Shaw · 2017 to 2026
$11.3M
Role of Phosphoinositides and Protein Kinases in the control of Cancer MetabolismR35CA197588 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI LEWIS C. CANTLEY · 2016 to 2026
$10.2M
Medical Scientist National Research Service AwardT32GM150375 · NIGMS · UNIVERSITY OF CHICAGO · PI Raghavendra G Mirmira · 2023 to 2026
$5.5M
Role of LKB1 and AMPK in Metformin and TZD Control of Glucose Metabolism in LiverR01DK080425 · NIDDK · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI SHAW, REUBEN · 2007 to 2015
$3.6M
Metabolic remodeling of skeletal muscle in mitochondrial myopathiesR01AR076029 · NIAMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI CHEN, QIUYING, D'AURELIO, MARILENA · 2020 to 2024
$2.7M
Pho-m6A assay: A phosphoselective method to quantify dynamics of m6A in mRNAR21ES032347 · NIEHS · WEILL MEDICAL COLL OF CORNELL UNIV · PI CHEN, QIUYING, JAFFREY, SAMIE R · 2020 to 2021
$466k
Modulation of intermediate metabolism, a new therapeutic approach for mitochondrial encephalomyopathiesR21NS118233 · NINDS · WEILL MEDICAL COLL OF CORNELL UNIV · PI CHEN, QIUYING, D'AURELIO, MARILENA · 2021 to 2021
$466k
Mechanisms and Models of Chromosomal Instability in CancerF99CA234950 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI NGO, BRYAN D · 2018 to 2019
$91k
NCI NIH HHS F99 CA234950NCI NIH HHS P01 CA120964NCI NIH HHS P30 CA014195NCI NIH HHS R35 CA197588NCI NIH HHS R35 CA220538NIAMS NIH HHS R01 AR076029NIDDK NIH HHS R01 DK080425NIEHS NIH HHS R21 ES032347NIGMS NIH HHS T32 GM007281NIGMS NIH HHS T32 GM150375NINDS NIH HHS R21 NS118233
6 · The paper itself

Abstract

KRAS is the most frequently mutated oncogene in human lung adenocarcinomas (hLUAD), and activating mutations frequently co-occur with loss-of-function mutations in TP53 or STK11/LKB1. However, mutation of all three genes is rarely observed in hLUAD, even though engineered comutation is highly aggressive in mouse lung adenocarcinoma (mLUAD). Here, we provide a mechanistic explanation for this difference by uncovering an evolutionary divergence in the regulation of triosephosphate isomerase (TPI1). In hLUAD, TPI1 activity is regulated via phosphorylation at Ser21 by the salt inducible kinases (SIK) in an LKB1-dependent manner, modulating flux between the completion of glycolysis and production of glycerol lipids. In mice, Ser21 of TPI1 is a Cys residue that can be oxidized to alter TPI1 activity without a need for SIKs or LKB1. Our findings suggest this metabolic flexibility is critical in rapidly growing cells with KRAS and TP53 mutations, explaining why the loss of LKB1 creates a liability in these tumors. SIGNIFICANCE: Utilizing phosphoproteomics and metabolomics in genetically engineered human cell lines and genetically engineered mouse models (GEMM), we uncover an evolutionary divergence in metabolic regulation within a clinically relevant genotype of human LUAD with therapeutic implications. Our data provide a cautionary example of the limits of GEMMs as tools to study human diseases such as cancers. This article is highlighted in the In This Issue feature, p. 799.

Indexed as

Adenocarcinoma of LungLung NeoplasmsTriose-Phosphate IsomeraseAMP-Activated Protein Kinase KinasesAMP-Activated Protein KinasesAnimalsHumansMiceMutationProtein Serine-Threonine KinasesProto-Oncogene Proteins p21(ras)AMP-Activated Protein Kinase KinasesAMP-Activated Protein KinasesProtein Serine-Threonine KinasesProto-Oncogene Proteins p21(ras)STK11 protein, humanStk11 protein, mouseTriose-Phosphate Isomerase

Identifiers

PMID36715544
PMCPMC10068449
OpenAlexW4318482016

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.