Evidence map›Paper›PMID 36715499›Full record

ArticleeLife2023

Growth cone advance requires EB1 as revealed by genomic replacement with a light-sensitive variant.

Alessandro Dema, Rabab Charafeddine, Shima Rahgozar, Jeffrey van Haren, Torsten Wittmann

Open access · goldAbstract read
In one paragraph

Article in eLife, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Alessandro DemaDepartment of Cell and Tissue Biology, University of California, San Francisco, San Francisco, United States.ORCID 0000-0003-0976-9396
Rabab CharafeddineDepartment of Cell and Tissue Biology, University of California, San Francisco, San Francisco, United States.
Shima RahgozarDepartment of Cell and Tissue Biology, University of California, San Francisco, San Francisco, United States.
Jeffrey van HarenDepartment of Cell Biology, Erasmus MC, Rotterdam, Netherlands.ORCID 0000-0002-3160-3547
Torsten WittmannDepartment of Cell and Tissue Biology, University of California, San Francisco, San Francisco, United States.ORCID 0000-0001-9134-691X
University of California, San Francisco · USErasmus MC · NL

Funding

Probing Microtubule Function in Neuronal DevelopmentR01NS107480 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI WITTMANN, TORSTEN · 2018 to 2022
$2.0M
Wide-field super-resolution spinning disk confocal microscopeS10OD028611 · OD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI WITTMANN, TORSTEN · 2020 to 2020
$600k
Spinning disk confocal / FRAP microscope for quantitative live cell imagingS10RR026758 · NCRR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI WITTMANN, TORSTEN · 2010 to 2010
$500k
Dissecting protein activities by reversible photo-inactivationR21CA224194 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI WITTMANN, TORSTEN · 2017 to 2018
$379k
NCI NIH HHS R21 CA224194NCRR NIH HHS S10 RR026758NIH HHS S10 OD028611NIH HHS S10 RR026758NINDS NIH HHS R01 NS107480
6 · The paper itself

Abstract

A challenge in analyzing dynamic intracellular cell biological processes is the dearth of methodologies that are sufficiently fast and specific to perturb intracellular protein activities. We previously developed a light-sensitive variant of the microtubule plus end-tracking protein EB1 by inserting a blue light-controlled protein dimerization module between functional domains. Here, we describe an advanced method to replace endogenous EB1 with this light-sensitive variant in a single genome editing step, thereby enabling this approach in human induced pluripotent stem cells (hiPSCs) and hiPSC-derived neurons. We demonstrate that acute and local optogenetic EB1 inactivation in developing cortical neurons induces microtubule depolymerization in the growth cone periphery and subsequent neurite retraction. In addition, advancing growth cones are repelled from areas of blue light exposure. These phenotypes were independent of the neuronal EB1 homolog EB3, revealing a direct dynamic role of EB1-mediated microtubule plus end interactions in neuron morphogenesis and neurite guidance.

Indexed as

Induced Pluripotent Stem CellsMicrotubule-Associated ProteinsGenomicsGrowth ConesHumansMicrotubulesProtein BindingMAPRE1 protein, humanMicrotubule-Associated Proteinscell biologyEB1growth conehumaninduced pluripotent stem cellsmicrotubulesneuron morphogenesisneuroscienceoptogenetics

Identifiers

PMID36715499
PMCPMC9917429
OpenAlexW4318480684

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.