Evidence map›Paper›PMID 36715334›Full record

ArticleNucleic acids research2023

Expanded MutaT7 toolkit efficiently and simultaneously accesses all possible transition mutations in bacteria.

Amanuella A Mengiste, Robert H Wilson, Rachel F Weissman, Louis J Papa Iii, Samuel J Hendel, Christopher L Moore, Vincent L Butty, Matthew D Shoulders

Erratum issuedAbstract read
In one paragraph

Article in Nucleic acids research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Review
  7. Targeted Transition Mutations in Phage-Assisted Evolution.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  8. Article
  9. Article
  10. In vivo directed evolution of an ultrafast Rubisco from a semianaerobic environment imparts oxygen resistance.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  11. Article
  12. Review
  13. Article
  14. Review
  15. Article
  16. Article
  17. Review
  18. MutaT7ACS synthetic biology · 2024
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

Amanuella A MengisteDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Robert H WilsonDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Rachel F WeissmanDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Louis J Papa IiiDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Samuel J HendelDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Christopher L MooreDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Vincent L ButtyBioMicroCenter, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Matthew D ShouldersDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.ORCID 0000-0002-6511-3431

Funding

TOXICOLOGY CORE UNITP30ES002109 · NIEHS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI YAFFE, MICHAEL B · 1985 to 2020
$25.6M
Leveraging Next-Generation Directed Evolution Platforms and Chemical Control of Proteostasis to Deliver Robust Biotechnologies and Illuminate Roles of Chaperone Networks in Protein EvolutionR35GM136354 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI SHOULDERS, MATTHEW DONALD · 2020 to 2024
$2.1M
NIEHS NIH HHS P30 ES002109NIGMS NIH HHS R35 GM136354
6 · The paper itself

Abstract

Targeted mutagenesis mediated by nucleotide base deaminase-T7 RNA polymerase fusions has recently emerged as a novel and broadly useful strategy to power genetic diversification in the context of in vivo directed evolution campaigns. Here, we expand the utility of this approach by introducing a highly active adenosine deaminase-T7 RNA polymerase fusion protein (eMutaT7A→G), resulting in higher mutation frequencies to enable more rapid directed evolution. We also assess the benefits and potential downsides of using this more active mutator. We go on to show in Escherichia coli that adenosine deaminase-bearing mutators (MutaT7A→G or eMutaT7A→G) can be employed in tandem with a cytidine deaminase-bearing mutator (MutaT7C→T) to introduce all possible transition mutations simultaneously. We illustrate the efficacy of this in vivo mutagenesis approach by exploring mutational routes to antibacterial drug resistance. This work sets the stage for general application of optimized MutaT7 tools able to induce all types of transition mutations during in vivo directed evolution campaigns across diverse organisms.

Indexed as

MutagenesisAdenosine DeaminaseEscherichia coliEscherichia coli ProteinsGenetic TechniquesMutationAdenosine DeaminaseEscherichia coli Proteins

Identifiers

PMID36715334
PMCPMC10085711

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.