Evidence map›Paper›PMID 36715107›Full record

ArticlePlant biotechnology journal2023

An iterative gene-editing strategy broadens eIF4E1 genetic diversity in Solanum lycopersicum and generates resistance to multiple potyvirus isolates.

Kyoka Kuroiwa, Benoit Danilo, Laura Perrot, Christina Thenault, Florian Veillet, Fabien Delacote, Philippe Duchateau, Fabien Nogué, Marianne Mazier, Jean-Luc Gallois

Open access · goldAbstract read
In one paragraph

Article in Plant biotechnology journal, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Fine mapping of the Chilli veinal mottle virus resistance 4 (cvr4) gene in pepper (Capsicum annuum L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
    Article
  9. Article
  10. Review
  11. Recent Advances in Tomato Gene Editing.International journal of molecular sciences · 2024
    Review
  12. Advances and Prospects of Virus-Resistant Breeding in Tomatoes.International journal of molecular sciences · 2023
    Review
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 1 country.

Kyoka KuroiwaINRAE, GAFL, Montfavet, France.ORCID 0000-0002-6179-8429
Benoit DaniloINRAE, GAFL, Montfavet, France.ORCID 0000-0002-0360-282X
Laura PerrotToulouse Biotechnology Institute, Université de Toulouse, Toulouse, France.ORCID 0000-0003-1149-4504
Christina ThenaultINRAE, GAFL, Montfavet, France.ORCID 0000-0001-6043-2508
Florian VeilletINRAE, Agrocampus Ouest, Université de Rennes, IGEPP, Ploudaniel, France.ORCID 0000-0002-6892-6825
Fabien DelacoteCELLECTIS S.A., Paris, France.
Philippe DuchateauCELLECTIS S.A., Paris, France.ORCID 0000-0002-3491-9168
Fabien NoguéUniversité Paris-Saclay, INRAE, AgroParisTech, Institut Jean-Pierre Bourgin (IJPB), Versailles, France.ORCID 0000-0003-0619-4638
Marianne MazierINRAE, GAFL, Montfavet, France.ORCID 0000-0002-1441-6897
Jean-Luc GalloisINRAE, GAFL, Montfavet, France.ORCID 0000-0003-0451-1740
Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement · FREpigénétique et Destin Cellulaire · FRAgroParisTech · FRInstitut Agro Rennes-Angers · FRUniversité Fédérale de Toulouse Midi-Pyrénées · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Resistance to potyviruses in plants has been largely provided by the selection of natural variant alleles of eukaryotic translation initiation factors (eIF) 4E in many crops. However, the sources of such variability for breeding can be limited for certain crop species, while new virus isolates continue to emerge. Different methods of mutagenesis have been applied to inactivate the eIF4E genes to generate virus resistance, but with limited success due to the physiological importance of translation factors and their redundancy. Here, we employed genome editing approaches at the base level to induce non-synonymous mutations in the eIF4E1 gene and create genetic diversity in cherry tomato (Solanum lycopersicum var. cerasiforme). We sequentially edited the genomic sequences coding for two regions of eIF4E1 protein, located around the cap-binding pocket and known to be important for susceptibility to potyviruses. We show that the editing of only one of the two regions, by gene knock-in and base editing, respectively, is not sufficient to provide resistance. However, combining amino acid mutations in both regions resulted in resistance to multiple potyviruses without affecting the functionality in translation initiation. Meanwhile, we report that extensive base editing in exonic region can alter RNA splicing pattern, resulting in gene knockout. Altogether our work demonstrates that precision editing allows to design plant factors based on the knowledge on evolutionarily selected alleles and enlarge the gene pool to potentially provide advantageous phenotypes such as pathogen resistance.

Indexed as

PotyvirusSolanum lycopersicumEukaryotic Initiation Factor-4EGene EditingMutationPlant BreedingPlant DiseasesPlant ProteinsEukaryotic Initiation Factor-4EPlant Proteinsbase editingeIF4Egenetic resistancegenome editingpotyvirustomato

Identifiers

PMID36715107
PMCPMC10106848
OpenAlexW4318542713

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.