Evidence map›Paper›PMID 36714980›Full record

ArticleMolecular systems biology2023

Efficient plasmid transfer via natural competence in a microbial co-culture.

Yu-Yu Cheng, Zhichao Zhou, James M Papadopoulos, Jason D Zuke, Tanya G Falbel, Karthik Anantharaman, Briana M Burton, Ophelia S Venturelli

Open access · goldAbstract read
In one paragraph

Article in Molecular systems biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
5.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 20 citations in OpenAlex.

  1. Evaluation of qPCR for QuantifyingAntibiotics (Basel, Switzerland) · 2026
    Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. SCCBiofilm · 2024
    Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Yu-Yu ChengDepartment of Biochemistry, University of Wisconsin, Madison, WI, USA.ORCID 0000-0002-9173-7344
Zhichao ZhouDepartment of Bacteriology, University of Wisconsin, Madison, WI, USA.
James M PapadopoulosDepartment of Chemical & Biological Engineering, University of Wisconsin, Madison, WI, USA.
Jason D ZukeDepartment of Bacteriology, University of Wisconsin, Madison, WI, USA.
Tanya G FalbelDepartment of Bacteriology, University of Wisconsin, Madison, WI, USA.
Karthik AnantharamanDepartment of Bacteriology, University of Wisconsin, Madison, WI, USA.
Briana M BurtonDepartment of Bacteriology, University of Wisconsin, Madison, WI, USA.ORCID 0000-0002-6444-8213
Ophelia S VenturelliDepartment of Biochemistry, University of Wisconsin, Madison, WI, USA.ORCID 0000-0003-2200-1963
University of Wisconsin–Madison · US

Funding

GRADUATE TRAINING IN MOLECULAR BIOSCIENCEST32GM007215 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI HULL, CHRISTINA M · 1985 to 2018
$22.5M
Elucidating the molecular and ecological design principles of stability and assembly of the human gut microbiotaR35GM124774 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI Ophelia Venturelli · 2017 to 2026
$2.9M
HHS ¦ NIH ¦ National Institute of General Medical Sciences (NIGMS) R35GM124774NIGMS NIH HHS T32 GM007215
6 · The paper itself

Abstract

The molecular and ecological factors shaping horizontal gene transfer (HGT) via natural transformation in microbial communities are largely unknown, which is critical for understanding the emergence of antibiotic-resistant pathogens. We investigate key factors shaping HGT in a microbial co-culture by quantifying extracellular DNA release, species growth, and HGT efficiency over time. In the co-culture, plasmid release and HGT efficiency are significantly enhanced than in the respective monocultures. The donor is a key determinant of HGT efficiency as plasmids induce the SOS response, enter a multimerized state, and are released in high concentrations, enabling efficient HGT. However, HGT is reduced in response to high donor lysis rates. HGT is independent of the donor viability state as both live and dead cells transfer the plasmid with high efficiency. In sum, plasmid HGT via natural transformation depends on the interplay of plasmid properties, donor stress responses and lysis rates, and interspecies interactions.

Indexed as

Anti-Bacterial AgentsDNACoculture TechniquesGene Transfer, HorizontalPlasmidsAnti-Bacterial AgentsDNAextracellular DNAhorizontal gene transfermicrobial co-culturenatural competenceSOS response

Identifiers

PMID36714980
PMCPMC9996237
OpenAlexW4318475149

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.